Tdicoccoides TRIDC6BG037540
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC6BG037540 [ TRIDC6BG037540] |
6B | 383193284 | 383196298 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC6BG037540.1 TRIDC6BG037540.1 |
High | No | 1807 | OG0015427 | Get ORF Coding potential... Type: noncoding Potential: -1.310 Folding energies... MFEI: -24.842 AMFE: -0.611 GC content %: 40.675 | |
| Tdicoccoides_TRIDC6BG037540.2 TRIDC6BG037540.2 |
High | No | 1139 | OG0015427 | Get ORF Coding potential... Type: noncoding Potential: -1.275 Folding energies... MFEI: -30.685 AMFE: -0.651 GC content %: 47.147 | |
| Tdicoccoides_TRIDC6BG037540.3 TRIDC6BG037540.3 |
High | No | 976 | OG0015427 | Get ORF Coding potential... Type: noncoding Potential: -1.261 Folding energies... MFEI: -32.725 AMFE: -0.651 GC content %: 50.307 | |
| Tdicoccoides_TRIDC6BG037540.4 TRIDC6BG037540.4 |
High | No | 829 | OG0015427 | Get ORF Coding potential... Type: noncoding Potential: -1.030 Folding energies... MFEI: -32.811 AMFE: -0.646 GC content %: 50.784 | |
| Tdicoccoides_TRIDC6BG037540.5 TRIDC6BG037540.5 |
High | No | 307 | OG0365411 | Get ORF Coding potential... Type: noncoding Potential: -0.955 Folding energies... MFEI: -19.316 AMFE: -0.565 GC content %: 34.202 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
