Tdicoccoides TRIDC6BG037610
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC6BG037610 [ TRIDC6BG037610] |
6B | 384399003 | 384403180 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC6BG037610.1 TRIDC6BG037610.1 |
High | No | 612 | OG0000605 | Get ORF Coding potential... Type: noncoding Potential: -1.187 Folding energies... MFEI: -29.428 AMFE: -0.587 GC content %: 50.163 | |
| Tdicoccoides_TRIDC6BG037610.10 TRIDC6BG037610.10 |
High | No | 1626 | OG0000605 | Get ORF Coding potential... Type: noncoding Potential: -0.190 Folding energies... MFEI: -21.790 AMFE: -0.580 GC content %: 37.577 | |
| Tdicoccoides_TRIDC6BG037610.11 TRIDC6BG037610.11 |
Low | No | 2811 | OG0000605 | Get ORF Coding potential... Type: noncoding Potential: -0.256 Folding energies... MFEI: -23.554 AMFE: -0.619 GC content %: 38.065 | |
| Tdicoccoides_TRIDC6BG037610.12 TRIDC6BG037610.12 |
Low | No | 2742 | OG0000605 | Get ORF Coding potential... Type: noncoding Potential: -0.253 Folding energies... MFEI: -23.793 AMFE: -0.621 GC content %: 38.330 | |
| Tdicoccoides_TRIDC6BG037610.13 TRIDC6BG037610.13 |
Low | No | 2102 | OG0000605 | Get ORF Coding potential... Type: noncoding Potential: -0.222 Folding energies... MFEI: -22.127 AMFE: -0.598 GC content %: 37.012 | |
| Tdicoccoides_TRIDC6BG037610.14 TRIDC6BG037610.14 |
High | No | 2777 | OG0000605 | Get ORF Coding potential... Type: noncoding Potential: -0.254 Folding energies... MFEI: -23.489 AMFE: -0.616 GC content %: 38.135 | |
| Tdicoccoides_TRIDC6BG037610.15 TRIDC6BG037610.15 |
High | No | 729 | OG0365412 | Get ORF Coding potential... Type: noncoding Potential: -0.869 Folding energies... MFEI: -20.206 AMFE: -0.550 GC content %: 36.763 | |
| Tdicoccoides_TRIDC6BG037610.16 TRIDC6BG037610.16 |
High | No | 1689 | OG0000605 | Get ORF Coding potential... Type: noncoding Potential: -0.884 Folding energies... MFEI: -23.185 AMFE: -0.613 GC content %: 37.833 | |
| Tdicoccoides_TRIDC6BG037610.17 TRIDC6BG037610.17 |
High | No | 1475 | OG0000605 | Get ORF Coding potential... Type: noncoding Potential: -0.910 Folding energies... MFEI: -23.397 AMFE: -0.604 GC content %: 38.712 | |
| Tdicoccoides_TRIDC6BG037610.18 TRIDC6BG037610.18 |
Low | No | 1491 | OG0000605 | Get ORF Coding potential... Type: noncoding Potential: -0.911 Folding energies... MFEI: -23.005 AMFE: -0.600 GC content %: 38.364 | |
| Tdicoccoides_TRIDC6BG037610.19 TRIDC6BG037610.19 |
Low | No | 1480 | OG0000605 | Get ORF Coding potential... Type: noncoding Potential: -0.911 Folding energies... MFEI: -23.689 AMFE: -0.610 GC content %: 38.851 | |
| Tdicoccoides_TRIDC6BG037610.2 TRIDC6BG037610.2 |
Low | No | 3509 | OG0000605 | Get ORF Coding potential... Type: noncoding Potential: -0.278 Folding energies... MFEI: -24.848 AMFE: -0.623 GC content %: 39.869 | |
| Tdicoccoides_TRIDC6BG037610.20 TRIDC6BG037610.20 |
Low | No | 1550 | OG0000605 | Get ORF Coding potential... Type: noncoding Potential: -0.769 Folding energies... MFEI: -23.394 AMFE: -0.605 GC content %: 38.645 | |
| Tdicoccoides_TRIDC6BG037610.3 TRIDC6BG037610.3 |
Low | No | 3415 | OG0000605 | Get ORF Coding potential... Type: noncoding Potential: -0.275 Folding energies... MFEI: -24.943 AMFE: -0.622 GC content %: 40.088 | |
| Tdicoccoides_TRIDC6BG037610.4 TRIDC6BG037610.4 |
High | No | 2978 | OG0000605 | Get ORF Coding potential... Type: noncoding Potential: -0.262 Folding energies... MFEI: -24.433 AMFE: -0.623 GC content %: 39.221 | |
| Tdicoccoides_TRIDC6BG037610.5 TRIDC6BG037610.5 |
Low | No | 3677 | OG0000605 | Get ORF Coding potential... Type: noncoding Potential: -0.282 Folding energies... MFEI: -24.748 AMFE: -0.628 GC content %: 39.434 | |
| Tdicoccoides_TRIDC6BG037610.6 TRIDC6BG037610.6 |
Low | No | 3603 | OG0000605 | Get ORF Coding potential... Type: noncoding Potential: -0.280 Folding energies... MFEI: -24.796 AMFE: -0.626 GC content %: 39.634 | |
| Tdicoccoides_TRIDC6BG037610.7 TRIDC6BG037610.7 |
Low | No | 2105 | OG0000605 | Get ORF Coding potential... Type: noncoding Potential: -0.223 Folding energies... MFEI: -22.038 AMFE: -0.589 GC content %: 37.435 | |
| Tdicoccoides_TRIDC6BG037610.8 TRIDC6BG037610.8 |
High | No | 2727 | OG0000605 | Get ORF Coding potential... Type: noncoding Potential: -0.253 Folding energies... MFEI: -23.920 AMFE: -0.619 GC content %: 38.614 | |
| Tdicoccoides_TRIDC6BG037610.9 TRIDC6BG037610.9 |
High | No | 2796 | OG0000605 | Get ORF Coding potential... Type: noncoding Potential: -0.255 Folding energies... MFEI: -23.737 AMFE: -0.619 GC content %: 38.340 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC6BG037610.6 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Tdicoccoides_TRIDC6BG037610.19 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Tdicoccoides_TRIDC6BG037610.7 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Tdicoccoides_TRIDC6BG037610.2 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Tdicoccoides_TRIDC6BG037610.11 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Tdicoccoides_TRIDC6BG037610.20 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Tdicoccoides_TRIDC6BG037610.12 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Tdicoccoides_TRIDC6BG037610.3 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Tdicoccoides_TRIDC6BG037610.13 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Tdicoccoides_TRIDC6BG037610.5 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
