GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Tdicoccoides_TRIDC6BG042440 [ TRIDC6BG042440]	6B	453506725	453510114	v1	Triticum dicoccoides (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Tdicoccoides_TRIDC6BG042440.1 TRIDC6BG042440.1	High	No	853	OG0010152		Get ORF Coding potential... Type: noncoding Potential: -0.583 Folding energies... MFEI: -34.138 AMFE: -0.646 GC content %: 52.872
Tdicoccoides_TRIDC6BG042440.2 TRIDC6BG042440.2	High	No	922	OG0010152		Get ORF Coding potential... Type: noncoding Potential: -0.604 Folding energies... MFEI: -32.625 AMFE: -0.641 GC content %: 50.868
Tdicoccoides_TRIDC6BG042440.3 TRIDC6BG042440.3	High	No	368	OG0002951		Get ORF Coding potential... Type: noncoding Potential: -0.413 Folding energies... MFEI: -30.353 AMFE: -0.617 GC content %: 49.185

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).