Tdicoccoides TRIDC6BG043770
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC6BG043770 [ TRIDC6BG043770] |
6B | 465675876 | 465709685 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC6BG043770.1 TRIDC6BG043770.1 |
Low | No | 4049 | OG0000102 | Get ORF Coding potential... Type: noncoding Potential: -0.948 Folding energies... MFEI: -28.726 AMFE: -0.648 GC content %: 44.332 | |
| Tdicoccoides_TRIDC6BG043770.10 TRIDC6BG043770.10 |
High | No | 3223 | OG0000102 | Get ORF Coding potential... Type: noncoding Potential: -0.811 Folding energies... MFEI: -28.998 AMFE: -0.634 GC content %: 45.765 | |
| Tdicoccoides_TRIDC6BG043770.11 TRIDC6BG043770.11 |
High | No | 2076 | OG0000102 | Get ORF Coding potential... Type: noncoding Potential: -0.753 Folding energies... MFEI: -30.072 AMFE: -0.674 GC content %: 44.605 | |
| Tdicoccoides_TRIDC6BG043770.12 TRIDC6BG043770.12 |
Low | No | 2726 | OG0000102 | Get ORF Coding potential... Type: noncoding Potential: -0.911 Folding energies... MFEI: -27.392 AMFE: -0.661 GC content %: 41.453 | |
| Tdicoccoides_TRIDC6BG043770.13 TRIDC6BG043770.13 |
High | No | 2933 | OG0000102 | Get ORF Coding potential... Type: noncoding Potential: -0.800 Folding energies... MFEI: -27.719 AMFE: -0.667 GC content %: 41.562 | |
| Tdicoccoides_TRIDC6BG043770.14 TRIDC6BG043770.14 |
Low | No | 2483 | OG0000102 | Get ORF Coding potential... Type: noncoding Potential: -0.901 Folding energies... MFEI: -27.757 AMFE: -0.667 GC content %: 41.643 | |
| Tdicoccoides_TRIDC6BG043770.15 TRIDC6BG043770.15 |
High | No | 2584 | OG0000102 | Get ORF Coding potential... Type: noncoding Potential: -0.784 Folding energies... MFEI: -29.892 AMFE: -0.628 GC content %: 47.562 | |
| Tdicoccoides_TRIDC6BG043770.16 TRIDC6BG043770.16 |
High | No | 1840 | OG0000102 | Get ORF Coding potential... Type: noncoding Potential: -0.733 Folding energies... MFEI: -28.908 AMFE: -0.660 GC content %: 43.804 | |
| Tdicoccoides_TRIDC6BG043770.17 TRIDC6BG043770.17 |
High | No | 4246 | OG0000102 | Get ORF Coding potential... Type: noncoding Potential: -0.893 Folding energies... MFEI: -28.780 AMFE: -0.652 GC content %: 44.136 | |
| Tdicoccoides_TRIDC6BG043770.18 TRIDC6BG043770.18 |
High | No | 2767 | OG0000102 | Get ORF Coding potential... Type: noncoding Potential: -0.793 Folding energies... MFEI: -28.139 AMFE: -0.670 GC content %: 41.995 | |
| Tdicoccoides_TRIDC6BG043770.19 TRIDC6BG043770.19 |
Low | No | 2606 | OG0000102 | Get ORF Coding potential... Type: noncoding Potential: -0.907 Folding energies... MFEI: -30.242 AMFE: -0.635 GC content %: 47.659 | |
| Tdicoccoides_TRIDC6BG043770.2 TRIDC6BG043770.2 |
High | No | 3962 | OG0000102 | Get ORF Coding potential... Type: noncoding Potential: -0.831 Folding energies... MFEI: -28.571 AMFE: -0.646 GC content %: 44.245 | |
| Tdicoccoides_TRIDC6BG043770.20 TRIDC6BG043770.20 |
Low | No | 2126 | OG0000102 | Get ORF Coding potential... Type: noncoding Potential: -0.881 Folding energies... MFEI: -29.581 AMFE: -0.663 GC content %: 44.638 | |
| Tdicoccoides_TRIDC6BG043770.21 TRIDC6BG043770.21 |
High | No | 3137 | OG0000102 | Get ORF Coding potential... Type: noncoding Potential: -0.808 Folding energies... MFEI: -28.441 AMFE: -0.628 GC content %: 45.298 | |
| Tdicoccoides_TRIDC6BG043770.22 TRIDC6BG043770.22 |
High | No | 3251 | OG0000102 | Get ORF Coding potential... Type: noncoding Potential: -0.812 Folding energies... MFEI: -28.720 AMFE: -0.631 GC content %: 45.494 | |
| Tdicoccoides_TRIDC6BG043770.23 TRIDC6BG043770.23 |
Low | No | 2270 | OG0000102 | Get ORF Coding potential... Type: noncoding Potential: -0.890 Folding energies... MFEI: -26.885 AMFE: -0.644 GC content %: 41.762 | |
| Tdicoccoides_TRIDC6BG043770.24 TRIDC6BG043770.24 |
Low | No | 2540 | OG0000102 | Get ORF Coding potential... Type: noncoding Potential: -0.904 Folding energies... MFEI: -26.957 AMFE: -0.660 GC content %: 40.866 | |
| Tdicoccoides_TRIDC6BG043770.25 TRIDC6BG043770.25 |
High | No | 3143 | OG0000102 | Get ORF Coding potential... Type: noncoding Potential: -0.808 Folding energies... MFEI: -28.492 AMFE: -0.629 GC content %: 45.275 | |
| Tdicoccoides_TRIDC6BG043770.26 TRIDC6BG043770.26 |
High | No | 2044 | OG0000102 | Get ORF Coding potential... Type: noncoding Potential: -0.751 Folding energies... MFEI: -28.200 AMFE: -0.661 GC content %: 42.661 | |
| Tdicoccoides_TRIDC6BG043770.27 TRIDC6BG043770.27 |
High | No | 2168 | OG0000102 | Get ORF Coding potential... Type: noncoding Potential: -0.760 Folding energies... MFEI: -28.819 AMFE: -0.669 GC content %: 43.081 | |
| Tdicoccoides_TRIDC6BG043770.28 TRIDC6BG043770.28 |
Low | No | 3373 | OG0000102 | Get ORF Coding potential... Type: noncoding Potential: -0.933 Folding energies... MFEI: -28.263 AMFE: -0.631 GC content %: 44.767 | |
| Tdicoccoides_TRIDC6BG043770.29 TRIDC6BG043770.29 |
Low | No | 3420 | OG0000102 | Get ORF Coding potential... Type: noncoding Potential: -0.934 Folding energies... MFEI: -29.041 AMFE: -0.642 GC content %: 45.263 | |
| Tdicoccoides_TRIDC6BG043770.3 TRIDC6BG043770.3 |
Low | No | 3969 | OG0000102 | Get ORF Coding potential... Type: noncoding Potential: -0.946 Folding energies... MFEI: -28.561 AMFE: -0.646 GC content %: 44.243 | |
| Tdicoccoides_TRIDC6BG043770.30 TRIDC6BG043770.30 |
High | No | 3144 | OG0000102 | Get ORF Coding potential... Type: noncoding Potential: -0.808 Folding energies... MFEI: -27.204 AMFE: -0.671 GC content %: 40.522 | |
| Tdicoccoides_TRIDC6BG043770.31 TRIDC6BG043770.31 |
High | No | 2788 | OG0000102 | Get ORF Coding potential... Type: noncoding Potential: -0.794 Folding energies... MFEI: -28.013 AMFE: -0.668 GC content %: 41.966 | |
| Tdicoccoides_TRIDC6BG043770.32 TRIDC6BG043770.32 |
Low | No | 2037 | OG0000102 | Get ORF Coding potential... Type: noncoding Potential: -0.876 Folding energies... MFEI: -28.537 AMFE: -0.662 GC content %: 43.103 | |
| Tdicoccoides_TRIDC6BG043770.33 TRIDC6BG043770.33 |
Low | No | 2672 | OG0000102 | Get ORF Coding potential... Type: noncoding Potential: -0.909 Folding energies... MFEI: -27.500 AMFE: -0.669 GC content %: 41.093 | |
| Tdicoccoides_TRIDC6BG043770.34 TRIDC6BG043770.34 |
High | No | 2074 | OG0000102 | Get ORF Coding potential... Type: noncoding Potential: -0.753 Folding energies... MFEI: -28.351 AMFE: -0.666 GC content %: 42.575 | |
| Tdicoccoides_TRIDC6BG043770.35 TRIDC6BG043770.35 |
High | No | 2618 | OG0000102 | Get ORF Coding potential... Type: noncoding Potential: -0.786 Folding energies... MFEI: -27.620 AMFE: -0.660 GC content %: 41.826 | |
| Tdicoccoides_TRIDC6BG043770.36 TRIDC6BG043770.36 |
High | No | 2628 | OG0000102 | Get ORF Coding potential... Type: noncoding Potential: -0.787 Folding energies... MFEI: -27.896 AMFE: -0.660 GC content %: 42.275 | |
| Tdicoccoides_TRIDC6BG043770.37 TRIDC6BG043770.37 |
High | No | 1533 | OG0000102 | Get ORF Coding potential... Type: noncoding Potential: -1.010 Folding energies... MFEI: -28.239 AMFE: -0.668 GC content %: 42.270 | |
| Tdicoccoides_TRIDC6BG043770.4 TRIDC6BG043770.4 |
High | No | 2976 | OG0000102 | Get ORF Coding potential... Type: noncoding Potential: -0.802 Folding energies... MFEI: -31.018 AMFE: -0.652 GC content %: 47.581 | |
| Tdicoccoides_TRIDC6BG043770.5 TRIDC6BG043770.5 |
Low | No | 3311 | OG0000102 | Get ORF Coding potential... Type: noncoding Potential: -0.931 Folding energies... MFEI: -29.423 AMFE: -0.641 GC content %: 45.908 | |
| Tdicoccoides_TRIDC6BG043770.6 TRIDC6BG043770.6 |
Low | No | 2483 | OG0000102 | Get ORF Coding potential... Type: noncoding Potential: -0.901 Folding energies... MFEI: -28.381 AMFE: -0.671 GC content %: 42.288 | |
| Tdicoccoides_TRIDC6BG043770.7 TRIDC6BG043770.7 |
High | No | 2476 | OG0000102 | Get ORF Coding potential... Type: noncoding Potential: -0.779 Folding energies... MFEI: -28.340 AMFE: -0.670 GC content %: 42.286 | |
| Tdicoccoides_TRIDC6BG043770.8 TRIDC6BG043770.8 |
Low | No | 2540 | OG0000102 | Get ORF Coding potential... Type: noncoding Potential: -0.904 Folding energies... MFEI: -27.681 AMFE: -0.661 GC content %: 41.890 | |
| Tdicoccoides_TRIDC6BG043770.9 TRIDC6BG043770.9 |
High | No | 2574 | OG0000102 | Get ORF Coding potential... Type: noncoding Potential: -0.784 Folding energies... MFEI: -27.704 AMFE: -0.663 GC content %: 41.803 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC6BG043770.32 | SwissProt | 2021-04-01 | Q16X92 | 2.36e-5 |
| Tdicoccoides_TRIDC6BG043770.23 | SwissProt | 2021-04-01 | Q16X92 | 2.66e-5 |
| Tdicoccoides_TRIDC6BG043770.1 | SwissProt | 2021-04-01 | B0W9F4 | 2.85e-6 |
| Tdicoccoides_TRIDC6BG043770.33 | SwissProt | 2021-04-01 | Q16X92 | 1.33e-5 |
| Tdicoccoides_TRIDC6BG043770.24 | SwissProt | 2021-04-01 | Q16X92 | 3.01e-5 |
| Tdicoccoides_TRIDC6BG043770.12 | SwissProt | 2021-04-01 | Q16X92 | 4.7e-7 |
| Tdicoccoides_TRIDC6BG043770.5 | SwissProt | 2021-04-01 | B0W9F4 | 2.31e-6 |
| Tdicoccoides_TRIDC6BG043770.28 | SwissProt | 2021-04-01 | Q16X92 | 1.7e-5 |
| Tdicoccoides_TRIDC6BG043770.14 | SwissProt | 2021-04-01 | Q16X92 | 2.95e-5 |
| Tdicoccoides_TRIDC6BG043770.6 | SwissProt | 2021-04-01 | B0W9F4 | 1.72e-6 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
