Tdicoccoides TRIDC6BG046430
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC6BG046430 [ TRIDC6BG046430] |
6B | 496711204 | 496714507 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC6BG046430.11 TRIDC6BG046430.11 |
Low | No | 726 | OG0009506 | Get ORF Coding potential... Type: noncoding Potential: -0.991 Folding energies... MFEI: -38.871 AMFE: -0.634 GC content %: 61.295 | |
| Tdicoccoides_TRIDC6BG046430.3 TRIDC6BG046430.3 |
Low | No | 2361 | OG0009506 | Get ORF Coding potential... Type: noncoding Potential: -0.035 Folding energies... MFEI: -29.068 AMFE: -0.659 GC content %: 44.134 | |
| Tdicoccoides_TRIDC6BG046430.5 TRIDC6BG046430.5 |
Low | No | 2640 | OG0009506 | Get ORF Coding potential... Type: noncoding Potential: -0.401 Folding energies... MFEI: -28.348 AMFE: -0.647 GC content %: 43.826 | |
| Tdicoccoides_TRIDC6BG046430.6 TRIDC6BG046430.6 |
Low | No | 2513 | OG0009506 | Get ORF Coding potential... Type: noncoding Potential: -0.042 Folding energies... MFEI: -30.092 AMFE: -0.658 GC content %: 45.722 | |
| Tdicoccoides_TRIDC6BG046430.7 TRIDC6BG046430.7 |
Low | No | 2280 | OG0009506 | Get ORF Coding potential... Type: noncoding Potential: -0.584 Folding energies... MFEI: -28.947 AMFE: -0.650 GC content %: 44.561 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC6BG046430.7 | SwissProt | 2021-04-01 | Q657X6 | 7.82e-7 |
| Tdicoccoides_TRIDC6BG046430.11 | SwissProt | 2021-04-01 | Q657X6 | 5.92e-8 |
| Tdicoccoides_TRIDC6BG046430.3 | SwissProt | 2021-04-01 | Q657X6 | 5.0e-23 |
| Tdicoccoides_TRIDC6BG046430.5 | SwissProt | 2021-04-01 | Q657X6 | 3.0e-11 |
| Tdicoccoides_TRIDC6BG046430.6 | SwissProt | 2021-04-01 | Q657X6 | 8.94e-7 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
