Tdicoccoides TRIDC6BG048410
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC6BG048410 [ TRIDC6BG048410] |
6B | 518718283 | 518722264 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC6BG048410.1 TRIDC6BG048410.1 |
Low | No | 2353 | OG0062676 | Get ORF Coding potential... Type: noncoding Potential: -1.070 Folding energies... MFEI: -30.093 AMFE: -0.670 GC content %: 44.921 | |
| Tdicoccoides_TRIDC6BG048410.10 TRIDC6BG048410.10 |
High | No | 2249 | OG0000854 | Get ORF Coding potential... Type: noncoding Potential: -1.000 Folding energies... MFEI: -30.289 AMFE: -0.647 GC content %: 46.821 | |
| Tdicoccoides_TRIDC6BG048410.11 TRIDC6BG048410.11 |
High | No | 1344 | OG0000854 | Get ORF Coding potential... Type: noncoding Potential: -0.955 Folding energies... MFEI: -32.165 AMFE: -0.630 GC content %: 51.042 | |
| Tdicoccoides_TRIDC6BG048410.12 TRIDC6BG048410.12 |
Low | No | 1412 | OG0000854 | Get ORF Coding potential... Type: noncoding Potential: -0.880 Folding energies... MFEI: -31.834 AMFE: -0.630 GC content %: 50.567 | |
| Tdicoccoides_TRIDC6BG048410.13 TRIDC6BG048410.13 |
Low | No | 1519 | OG0000854 | Get ORF Coding potential... Type: noncoding Potential: -0.888 Folding energies... MFEI: -32.969 AMFE: -0.656 GC content %: 50.230 | |
| Tdicoccoides_TRIDC6BG048410.14 TRIDC6BG048410.14 |
Low | No | 1721 | OG0000854 | Get ORF Coding potential... Type: noncoding Potential: -0.902 Folding energies... MFEI: -32.063 AMFE: -0.655 GC content %: 48.925 | |
| Tdicoccoides_TRIDC6BG048410.15 TRIDC6BG048410.15 |
High | No | 1300 | OG0000854 | Get ORF Coding potential... Type: noncoding Potential: -0.984 Folding energies... MFEI: -33.854 AMFE: -0.650 GC content %: 52.077 | |
| Tdicoccoides_TRIDC6BG048410.16 TRIDC6BG048410.16 |
Low | No | 1433 | OG0000854 | Get ORF Coding potential... Type: noncoding Potential: -1.028 Folding energies... MFEI: -33.112 AMFE: -0.661 GC content %: 50.105 | |
| Tdicoccoides_TRIDC6BG048410.17 TRIDC6BG048410.17 |
Low | No | 2005 | OG0000854 | Get ORF Coding potential... Type: noncoding Potential: -0.917 Folding energies... MFEI: -27.661 AMFE: -0.701 GC content %: 39.451 | |
| Tdicoccoides_TRIDC6BG048410.18 TRIDC6BG048410.18 |
Low | No | 1126 | OG0000854 | Get ORF Coding potential... Type: noncoding Potential: -0.932 Folding energies... MFEI: -28.863 AMFE: -0.670 GC content %: 43.073 | |
| Tdicoccoides_TRIDC6BG048410.19 TRIDC6BG048410.19 |
High | No | 1022 | OG0365577 | Get ORF Coding potential... Type: noncoding Potential: -0.944 Folding energies... MFEI: -27.162 AMFE: -0.653 GC content %: 41.585 | |
| Tdicoccoides_TRIDC6BG048410.2 TRIDC6BG048410.2 |
High | No | 1352 | OG0000854 | Get ORF Coding potential... Type: noncoding Potential: -0.955 Folding energies... MFEI: -32.722 AMFE: -0.634 GC content %: 51.627 | |
| Tdicoccoides_TRIDC6BG048410.20 TRIDC6BG048410.20 |
High | No | 900 | OG0000854 | Get ORF Coding potential... Type: noncoding Potential: -0.919 Folding energies... MFEI: -29.911 AMFE: -0.665 GC content %: 45.000 | |
| Tdicoccoides_TRIDC6BG048410.3 TRIDC6BG048410.3 |
High | No | 1600 | OG0000854 | Get ORF Coding potential... Type: noncoding Potential: -0.973 Folding energies... MFEI: -33.144 AMFE: -0.659 GC content %: 50.312 | |
| Tdicoccoides_TRIDC6BG048410.4 TRIDC6BG048410.4 |
Low | No | 2569 | OG0062676 | Get ORF Coding potential... Type: noncoding Potential: -1.139 Folding energies... MFEI: -30.409 AMFE: -0.678 GC content %: 44.881 | |
| Tdicoccoides_TRIDC6BG048410.5 TRIDC6BG048410.5 |
Low | No | 1680 | OG0000854 | Get ORF Coding potential... Type: noncoding Potential: -0.899 Folding energies... MFEI: -32.750 AMFE: -0.655 GC content %: 50.000 | |
| Tdicoccoides_TRIDC6BG048410.6 TRIDC6BG048410.6 |
Low | No | 1695 | OG0000854 | Get ORF Coding potential... Type: noncoding Potential: -0.900 Folding energies... MFEI: -32.684 AMFE: -0.654 GC content %: 49.971 | |
| Tdicoccoides_TRIDC6BG048410.7 TRIDC6BG048410.7 |
High | No | 2562 | OG0015431 | Get ORF Coding potential... Type: noncoding Potential: -1.009 Folding energies... MFEI: -30.301 AMFE: -0.682 GC content %: 44.418 | |
| Tdicoccoides_TRIDC6BG048410.8 TRIDC6BG048410.8 |
Low | No | 1559 | OG0000854 | Get ORF Coding potential... Type: noncoding Potential: -0.891 Folding energies... MFEI: -32.861 AMFE: -0.651 GC content %: 50.481 | |
| Tdicoccoides_TRIDC6BG048410.9 TRIDC6BG048410.9 |
High | No | 1464 | OG0000854 | Get ORF Coding potential... Type: noncoding Potential: -0.964 Folding energies... MFEI: -33.374 AMFE: -0.655 GC content %: 50.956 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC6BG048410.1 | SwissProt | 2021-04-01 | Q9SEU4 | 2.42e-8 |
| Tdicoccoides_TRIDC6BG048410.18 | SwissProt | 2021-04-01 | Q9SEU4 | 9.27e-9 |
| Tdicoccoides_TRIDC6BG048410.12 | SwissProt | 2021-04-01 | Q9SEU4 | 1.02e-8 |
| Tdicoccoides_TRIDC6BG048410.4 | SwissProt | 2021-04-01 | Q9SEU4 | 3.37e-8 |
| Tdicoccoides_TRIDC6BG048410.13 | SwissProt | 2021-04-01 | Q9SEU4 | 1.12e-8 |
| Tdicoccoides_TRIDC6BG048410.5 | SwissProt | 2021-04-01 | Q9SEU4 | 1.31e-8 |
| Tdicoccoides_TRIDC6BG048410.14 | SwissProt | 2021-04-01 | Q9SEU4 | 1.43e-8 |
| Tdicoccoides_TRIDC6BG048410.6 | SwissProt | 2021-04-01 | Q9SEU4 | 1.33e-8 |
| Tdicoccoides_TRIDC6BG048410.16 | SwissProt | 2021-04-01 | Q9SEU4 | 1.13e-8 |
| Tdicoccoides_TRIDC6BG048410.8 | SwissProt | 2021-04-01 | Q9SEU4 | 1.17e-8 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
