GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Tdicoccoides_TRIDC6BG064130 [ TRIDC6BG064130]	6B	660896859	660897894	v1	Triticum dicoccoides (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Tdicoccoides_TRIDC6BG064130.1 TRIDC6BG064130.1	High	No	842	OG0026040		Get ORF Coding potential... Type: noncoding Potential: -0.940 Folding energies... MFEI: -34.430 AMFE: -0.579 GC content %: 59.501
Tdicoccoides_TRIDC6BG064130.2 TRIDC6BG064130.2	High	No	460	OG0365820		Get ORF Coding potential... Type: noncoding Potential: -1.416 Folding energies... MFEI: -24.870 AMFE: -0.530 GC content %: 46.957
Tdicoccoides_TRIDC6BG064130.3 TRIDC6BG064130.3	High	No	239	OG0365821		Get ORF Coding potential... Type: noncoding Potential: -1.065 Folding energies... MFEI: -17.615 AMFE: -0.270 GC content %: 65.272

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).