Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Tdicoccoides_TRIDC6BG066950 [ TRIDC6BG066950] |
6B | 676354123 | 676358226 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Tdicoccoides_TRIDC6BG066950.1 TRIDC6BG066950.1 |
Low | No | 2333 | OG0015440 | Get ORF Coding potential... Type: noncoding Potential: -1.276 Folding energies... MFEI: -28.577 AMFE: -0.657 GC content %: 43.463 | |
Tdicoccoides_TRIDC6BG066950.2 TRIDC6BG066950.2 |
High | No | 2220 | OG0015440 | Get ORF Coding potential... Type: noncoding Potential: -1.281 Folding energies... MFEI: -24.275 AMFE: -0.617 GC content %: 39.324 | |
Tdicoccoides_TRIDC6BG066950.3 TRIDC6BG066950.3 |
Low | No | 2601 | OG0015440 | Get ORF Coding potential... Type: noncoding Potential: -1.283 Folding energies... MFEI: -28.208 AMFE: -0.664 GC content %: 42.484 | |
Tdicoccoides_TRIDC6BG066950.4 TRIDC6BG066950.4 |
High | No | 1539 | OG0015440 | Get ORF Coding potential... Type: noncoding Potential: -1.252 Folding energies... MFEI: -22.937 AMFE: -0.600 GC content %: 38.207 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Tdicoccoides_TRIDC6BG066950.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PIF-Harbinger | |
Tdicoccoides_TRIDC6BG066950.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PIF-Harbinger |