Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Tdicoccoides_TRIDC7AG000760 [ TRIDC7AG000760] |
7A | 2836285 | 2841276 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Tdicoccoides_TRIDC7AG000760.11 TRIDC7AG000760.11 |
High | No | 1055 | OG0062720 | Get ORF Coding potential... Type: noncoding Potential: -0.507 Folding energies... MFEI: -24.597 AMFE: -0.603 GC content %: 40.758 | |
Tdicoccoides_TRIDC7AG000760.12 TRIDC7AG000760.12 |
Low | No | 1498 | OG0026073 | Get ORF Coding potential... Type: coding Potential: 0.194 Folding energies... MFEI: -27.684 AMFE: -0.639 GC content %: 43.324 | |
Tdicoccoides_TRIDC7AG000760.6 TRIDC7AG000760.6 |
Low | No | 1579 | OG0062720 | Get ORF Coding potential... Type: coding Potential: 0.123 Folding energies... MFEI: -27.226 AMFE: -0.628 GC content %: 43.382 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Tdicoccoides_TRIDC7AG000760.12 | RepBase (RepeatMasker) | 2014-01-31 | DNA/Sola | |
Tdicoccoides_TRIDC7AG000760.6 | RepBase (RepeatMasker) | 2014-01-31 | DNA/Sola |