Tdicoccoides TRIDC7AG004770
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC7AG004770 [ TRIDC7AG004770] |
7A | 16911960 | 16915770 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC7AG004770.1 TRIDC7AG004770.1 |
Low | No | 1892 | OG0009512 | Get ORF Coding potential... Type: noncoding Potential: -0.866 Folding energies... MFEI: -31.247 AMFE: -0.673 GC content %: 46.459 | |
| Tdicoccoides_TRIDC7AG004770.2 TRIDC7AG004770.2 |
Low | No | 1544 | OG0009512 | Get ORF Coding potential... Type: noncoding Potential: -0.829 Folding energies... MFEI: -28.387 AMFE: -0.646 GC content %: 43.912 | |
| Tdicoccoides_TRIDC7AG004770.3 TRIDC7AG004770.3 |
Low | No | 1353 | OG0009512 | Get ORF Coding potential... Type: noncoding Potential: -0.801 Folding energies... MFEI: -29.069 AMFE: -0.655 GC content %: 44.346 | |
| Tdicoccoides_TRIDC7AG004770.4 TRIDC7AG004770.4 |
Low | No | 1418 | OG0009512 | Get ORF Coding potential... Type: noncoding Potential: -0.811 Folding energies... MFEI: -27.920 AMFE: -0.650 GC content %: 42.948 | |
| Tdicoccoides_TRIDC7AG004770.5 TRIDC7AG004770.5 |
Low | No | 1134 | OG0365978 | Get ORF Coding potential... Type: noncoding Potential: -0.896 Folding energies... MFEI: -32.504 AMFE: -0.701 GC content %: 46.384 | |
| Tdicoccoides_TRIDC7AG004770.6 TRIDC7AG004770.6 |
Low | No | 2095 | OG0009512 | Get ORF Coding potential... Type: noncoding Potential: -0.882 Folding energies... MFEI: -27.117 AMFE: -0.643 GC content %: 42.196 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC7AG004770.5 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Tdicoccoides_TRIDC7AG004770.1 | SwissProt | 2021-04-01 | Q9LTB0 | 1.31e-6 |
| Tdicoccoides_TRIDC7AG004770.2 | SwissProt | 2021-04-01 | Q9LTB0 | 9.45e-7 |
| Tdicoccoides_TRIDC7AG004770.3 | SwissProt | 2021-04-01 | Q9LTB0 | 7.42e-7 |
| Tdicoccoides_TRIDC7AG004770.4 | SwissProt | 2021-04-01 | Q9LTB0 | 8.12e-7 |
| Tdicoccoides_TRIDC7AG004770.6 | SwissProt | 2021-04-01 | Q9LTB0 | 1.53e-6 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
