Tdicoccoides TRIDC7AG006360

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Tdicoccoides_TRIDC7AG006360
[ TRIDC7AG006360]
7A 23895319 23898109 v1 Triticum dicoccoides (Ensembl Plants 51)
Coding?
Yes


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Tdicoccoides_TRIDC7AG006360.2
TRIDC7AG006360.2
Low No 414 OG0062726
Coding potential...
Type: noncoding Potential: -0.129
Folding energies...
MFEI: -36.522 AMFE: -0.663
GC content
%: 55.072
Tdicoccoides_TRIDC7AG006360.3
TRIDC7AG006360.3
Low No 458 OG0062726
Coding potential...
Type: noncoding Potential: -0.136
Folding energies...
MFEI: -34.410 AMFE: -0.651
GC content
%: 52.838
Tdicoccoides_TRIDC7AG006360.4
TRIDC7AG006360.4
High No 291 OG0023015
Coding potential...
Type: noncoding Potential: -1.189
Folding energies...
MFEI: -27.320 AMFE: -0.530
GC content
%: 51.546


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Tdicoccoides_TRIDC7AG006360.2  SwissProt 2021-04-01 Q8K2Y7 7.75e-13
Tdicoccoides_TRIDC7AG006360.3  SwissProt 2021-04-01 Q8K2Y7 7.47e-13


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Tdicoccoides_TRIDC7AG006360.png