Tdicoccoides TRIDC7AG012810
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC7AG012810 [ TRIDC7AG012810] |
7A | 61518709 | 61584898 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC7AG012810.1 TRIDC7AG012810.1 |
High | No | 800 | OG0002802 | Get ORF Coding potential... Type: noncoding Potential: -0.065 Folding energies... MFEI: -26.363 AMFE: -0.579 GC content %: 45.500 | |
| Tdicoccoides_TRIDC7AG012810.2 TRIDC7AG012810.2 |
High | No | 1432 | OG0002802 | Get ORF Coding potential... Type: noncoding Potential: -1.026 Folding energies... MFEI: -25.915 AMFE: -0.651 GC content %: 39.804 | |
| Tdicoccoides_TRIDC7AG012810.3 TRIDC7AG012810.3 |
High | No | 901 | OG0002802 | Get ORF Coding potential... Type: noncoding Potential: -0.763 Folding energies... MFEI: -25.294 AMFE: -0.626 GC content %: 40.400 | |
| Tdicoccoides_TRIDC7AG012810.4 TRIDC7AG012810.4 |
Low | No | 747 | OG0002802 | Get ORF Coding potential... Type: coding Potential: 0.014 Folding energies... MFEI: -27.697 AMFE: -0.596 GC content %: 46.452 | |
| Tdicoccoides_TRIDC7AG012810.5 TRIDC7AG012810.5 |
High | No | 799 | OG0002802 | Get ORF Coding potential... Type: noncoding Potential: -0.159 Folding energies... MFEI: -26.345 AMFE: -0.590 GC content %: 44.681 | |
| Tdicoccoides_TRIDC7AG012810.6 TRIDC7AG012810.6 |
Low | No | 792 | OG0002802 | Get ORF Coding potential... Type: coding Potential: 0.496 Folding energies... MFEI: -28.220 AMFE: -0.599 GC content %: 47.096 | |
| Tdicoccoides_TRIDC7AG012810.7 TRIDC7AG012810.7 |
High | No | 1034 | OG0002802 | Get ORF Coding potential... Type: noncoding Potential: -0.510 Folding energies... MFEI: -24.874 AMFE: -0.614 GC content %: 40.522 | |
| Tdicoccoides_TRIDC7AG012810.8 TRIDC7AG012810.8 |
High | No | 877 | OG0002802 | Get ORF Coding potential... Type: noncoding Potential: -0.185 Folding energies... MFEI: -26.214 AMFE: -0.600 GC content %: 43.672 | |
| Tdicoccoides_TRIDC7AG012810.9 TRIDC7AG012810.9 |
Low | No | 817 | OG0002802 | Get ORF Coding potential... Type: coding Potential: 0.365 Folding energies... MFEI: -26.499 AMFE: -0.601 GC content %: 44.064 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
