Tdicoccoides TRIDC7AG018080
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC7AG018080 [ TRIDC7AG018080] |
7A | 98602923 | 98606204 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC7AG018080.1 TRIDC7AG018080.1 |
High | No | 839 | OG0001595 | Get ORF Coding potential... Type: noncoding Potential: -0.569 Folding energies... MFEI: -30.918 AMFE: -0.650 GC content %: 47.557 | |
| Tdicoccoides_TRIDC7AG018080.2 TRIDC7AG018080.2 |
High | No | 782 | OG0001595 | Get ORF Coding potential... Type: noncoding Potential: -0.551 Folding energies... MFEI: -30.026 AMFE: -0.647 GC content %: 46.419 | |
| Tdicoccoides_TRIDC7AG018080.3 TRIDC7AG018080.3 |
High | No | 928 | OG0001595 | Get ORF Coding potential... Type: noncoding Potential: -0.594 Folding energies... MFEI: -30.690 AMFE: -0.622 GC content %: 49.353 | |
| Tdicoccoides_TRIDC7AG018080.4 TRIDC7AG018080.4 |
High | No | 451 | OG0001595 | Get ORF Coding potential... Type: noncoding Potential: -1.303 Folding energies... MFEI: -32.262 AMFE: -0.680 GC content %: 47.450 | |
| Tdicoccoides_TRIDC7AG018080.5 TRIDC7AG018080.5 |
High | No | 602 | OG0001595 | Get ORF Coding potential... Type: noncoding Potential: -0.479 Folding energies... MFEI: -27.359 AMFE: -0.633 GC content %: 43.189 | |
| Tdicoccoides_TRIDC7AG018080.6 TRIDC7AG018080.6 |
High | No | 462 | OG0001595 | Get ORF Coding potential... Type: noncoding Potential: -0.402 Folding energies... MFEI: -29.156 AMFE: -0.607 GC content %: 48.052 | |
| Tdicoccoides_TRIDC7AG018080.7 TRIDC7AG018080.7 |
High | No | 331 | OG0000886 | Get ORF Coding potential... Type: noncoding Potential: -0.790 Folding energies... MFEI: -25.378 AMFE: -0.571 GC content %: 44.411 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
