GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Tdicoccoides_TRIDC7AG021660 [ TRIDC7AG021660]	7A	125946878	125948950	v1	Triticum dicoccoides (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Tdicoccoides_TRIDC7AG021660.1 TRIDC7AG021660.1	High	No	1107	OG0366189		Get ORF Coding potential... Type: noncoding Potential: -0.908 Folding energies... MFEI: -27.191 AMFE: -0.683 GC content %: 39.837
Tdicoccoides_TRIDC7AG021660.2 TRIDC7AG021660.2	High	No	1051	OG0000326		Get ORF Coding potential... Type: noncoding Potential: -0.898 Folding energies... MFEI: -25.433 AMFE: -0.675 GC content %: 37.678
Tdicoccoides_TRIDC7AG021660.3 TRIDC7AG021660.3	High	No	635	OG0366190		Get ORF Coding potential... Type: noncoding Potential: -1.097 Folding energies... MFEI: -24.205 AMFE: -0.630 GC content %: 38.425

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).