Tdicoccoides TRIDC7AG033180
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC7AG033180 [ TRIDC7AG033180] |
7A | 243772655 | 243774739 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC7AG033180.2 TRIDC7AG033180.2 |
Low | No | 1111 | OG0009516 | Get ORF Coding potential... Type: noncoding Potential: -0.912 Folding energies... MFEI: -35.464 AMFE: -0.647 GC content %: 54.815 | |
| Tdicoccoides_TRIDC7AG033180.3 TRIDC7AG033180.3 |
Low | No | 675 | OG0009516 | Get ORF Coding potential... Type: noncoding Potential: -1.065 Folding energies... MFEI: -30.889 AMFE: -0.608 GC content %: 50.815 | |
| Tdicoccoides_TRIDC7AG033180.4 TRIDC7AG033180.4 |
Low | No | 633 | OG0009516 | Get ORF Coding potential... Type: noncoding Potential: -1.040 Folding energies... MFEI: -29.558 AMFE: -0.596 GC content %: 49.605 | |
| Tdicoccoides_TRIDC7AG033180.5 TRIDC7AG033180.5 |
Low | No | 720 | OG0009516 | Get ORF Coding potential... Type: noncoding Potential: -0.978 Folding energies... MFEI: -27.792 AMFE: -0.587 GC content %: 47.361 | |
| Tdicoccoides_TRIDC7AG033180.6 TRIDC7AG033180.6 |
High | No | 845 | OG0009516 | Get ORF Coding potential... Type: noncoding Potential: -1.138 Folding energies... MFEI: -26.864 AMFE: -0.590 GC content %: 45.562 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC7AG033180.4 | SwissProt | 2021-04-01 | Q9QZS2 | 6.85e-4 |
| Tdicoccoides_TRIDC7AG033180.5 | SwissProt | 2021-04-01 | Q9QZS2 | 8.17e-4 |
| Tdicoccoides_TRIDC7AG033180.2 | SwissProt | 2021-04-01 | O88846 | 4.4e-4 |
| Tdicoccoides_TRIDC7AG033180.3 | SwissProt | 2021-04-01 | Q9QZS2 | 5.45e-4 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
