Tdicoccoides TRIDC7AG034370
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC7AG034370 [ TRIDC7AG034370] |
7A | 259503192 | 259508941 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC7AG034370.1 TRIDC7AG034370.1 |
Low | No | 2563 | OG0000060 | Get ORF Coding potential... Type: noncoding Potential: -0.179 Folding energies... MFEI: -26.602 AMFE: -0.640 GC content %: 41.592 | |
| Tdicoccoides_TRIDC7AG034370.10 TRIDC7AG034370.10 |
Low | No | 1175 | OG0000060 | Get ORF Coding potential... Type: noncoding Potential: -0.294 Folding energies... MFEI: -27.191 AMFE: -0.619 GC content %: 43.915 | |
| Tdicoccoides_TRIDC7AG034370.11 TRIDC7AG034370.11 |
Low | No | 1454 | OG0000060 | Get ORF Coding potential... Type: noncoding Potential: -0.238 Folding energies... MFEI: -26.802 AMFE: -0.631 GC content %: 42.503 | |
| Tdicoccoides_TRIDC7AG034370.12 TRIDC7AG034370.12 |
Low | No | 1208 | OG0000060 | Get ORF Coding potential... Type: noncoding Potential: -0.297 Folding energies... MFEI: -27.823 AMFE: -0.628 GC content %: 44.288 | |
| Tdicoccoides_TRIDC7AG034370.13 TRIDC7AG034370.13 |
Low | No | 1442 | OG0000060 | Get ORF Coding potential... Type: noncoding Potential: -0.222 Folding energies... MFEI: -26.685 AMFE: -0.623 GC content %: 42.857 | |
| Tdicoccoides_TRIDC7AG034370.14 TRIDC7AG034370.14 |
Low | No | 1313 | OG0000060 | Get ORF Coding potential... Type: noncoding Potential: -0.397 Folding energies... MFEI: -27.555 AMFE: -0.630 GC content %: 43.717 | |
| Tdicoccoides_TRIDC7AG034370.15 TRIDC7AG034370.15 |
Low | No | 1705 | OG0000060 | Get ORF Coding potential... Type: noncoding Potential: -0.347 Folding energies... MFEI: -28.047 AMFE: -0.646 GC content %: 43.402 | |
| Tdicoccoides_TRIDC7AG034370.16 TRIDC7AG034370.16 |
Low | No | 1365 | OG0000060 | Get ORF Coding potential... Type: noncoding Potential: -0.412 Folding energies... MFEI: -28.542 AMFE: -0.635 GC content %: 44.982 | |
| Tdicoccoides_TRIDC7AG034370.17 TRIDC7AG034370.17 |
Low | No | 1480 | OG0000060 | Get ORF Coding potential... Type: noncoding Potential: -0.289 Folding energies... MFEI: -27.905 AMFE: -0.630 GC content %: 44.324 | |
| Tdicoccoides_TRIDC7AG034370.18 TRIDC7AG034370.18 |
Low | No | 1215 | OG0000060 | Get ORF Coding potential... Type: noncoding Potential: -0.379 Folding energies... MFEI: -28.140 AMFE: -0.633 GC content %: 44.444 | |
| Tdicoccoides_TRIDC7AG034370.19 TRIDC7AG034370.19 |
Low | No | 1596 | OG0000060 | Get ORF Coding potential... Type: noncoding Potential: -0.317 Folding energies... MFEI: -28.152 AMFE: -0.643 GC content %: 43.797 | |
| Tdicoccoides_TRIDC7AG034370.2 TRIDC7AG034370.2 |
Low | No | 2473 | OG0000060 | Get ORF Coding potential... Type: noncoding Potential: -0.231 Folding energies... MFEI: -26.866 AMFE: -0.628 GC content %: 42.782 | |
| Tdicoccoides_TRIDC7AG034370.20 TRIDC7AG034370.20 |
Low | No | 1573 | OG0000060 | Get ORF Coding potential... Type: noncoding Potential: -0.254 Folding energies... MFEI: -27.127 AMFE: -0.642 GC content %: 42.276 | |
| Tdicoccoides_TRIDC7AG034370.21 TRIDC7AG034370.21 |
Low | No | 1712 | OG0000060 | Get ORF Coding potential... Type: noncoding Potential: -0.202 Folding energies... MFEI: -27.675 AMFE: -0.644 GC content %: 42.991 | |
| Tdicoccoides_TRIDC7AG034370.22 TRIDC7AG034370.22 |
Low | No | 1182 | OG0000060 | Get ORF Coding potential... Type: noncoding Potential: -0.294 Folding energies... MFEI: -26.201 AMFE: -0.622 GC content %: 42.132 | |
| Tdicoccoides_TRIDC7AG034370.23 TRIDC7AG034370.23 |
Low | No | 1436 | OG0000060 | Get ORF Coding potential... Type: noncoding Potential: -0.357 Folding energies... MFEI: -27.869 AMFE: -0.629 GC content %: 44.290 | |
| Tdicoccoides_TRIDC7AG034370.24 TRIDC7AG034370.24 |
Low | No | 1498 | OG0000060 | Get ORF Coding potential... Type: noncoding Potential: -0.317 Folding energies... MFEI: -27.029 AMFE: -0.630 GC content %: 42.924 | |
| Tdicoccoides_TRIDC7AG034370.25 TRIDC7AG034370.25 |
Low | No | 1555 | OG0000060 | Get ORF Coding potential... Type: noncoding Potential: -0.358 Folding energies... MFEI: -28.129 AMFE: -0.650 GC content %: 43.280 | |
| Tdicoccoides_TRIDC7AG034370.26 TRIDC7AG034370.26 |
Low | No | 2377 | OG0000060 | Get ORF Coding potential... Type: noncoding Potential: -0.446 Folding energies... MFEI: -26.336 AMFE: -0.634 GC content %: 41.523 | |
| Tdicoccoides_TRIDC7AG034370.27 TRIDC7AG034370.27 |
Low | No | 2309 | OG0000060 | Get ORF Coding potential... Type: noncoding Potential: -0.442 Folding energies... MFEI: -26.877 AMFE: -0.630 GC content %: 42.659 | |
| Tdicoccoides_TRIDC7AG034370.28 TRIDC7AG034370.28 |
Low | No | 2384 | OG0000060 | Get ORF Coding potential... Type: noncoding Potential: -0.306 Folding energies... MFEI: -26.288 AMFE: -0.635 GC content %: 41.401 | |
| Tdicoccoides_TRIDC7AG034370.29 TRIDC7AG034370.29 |
Low | No | 1686 | OG0000060 | Get ORF Coding potential... Type: noncoding Potential: -0.234 Folding energies... MFEI: -26.738 AMFE: -0.632 GC content %: 42.289 | |
| Tdicoccoides_TRIDC7AG034370.3 TRIDC7AG034370.3 |
Low | No | 2208 | OG0000060 | Get ORF Coding potential... Type: noncoding Potential: -0.216 Folding energies... MFEI: -26.680 AMFE: -0.625 GC content %: 42.663 | |
| Tdicoccoides_TRIDC7AG034370.30 TRIDC7AG034370.30 |
Low | No | 2351 | OG0000060 | Get ORF Coding potential... Type: noncoding Potential: -0.436 Folding energies... MFEI: -27.061 AMFE: -0.638 GC content %: 42.407 | |
| Tdicoccoides_TRIDC7AG034370.31 TRIDC7AG034370.31 |
Low | No | 2404 | OG0000060 | Get ORF Coding potential... Type: noncoding Potential: -0.374 Folding energies... MFEI: -26.993 AMFE: -0.638 GC content %: 42.304 | |
| Tdicoccoides_TRIDC7AG034370.32 TRIDC7AG034370.32 |
Low | No | 1427 | OG0000060 | Get ORF Coding potential... Type: noncoding Potential: -0.233 Folding energies... MFEI: -26.945 AMFE: -0.633 GC content %: 42.537 | |
| Tdicoccoides_TRIDC7AG034370.33 TRIDC7AG034370.33 |
Low | No | 585 | OG0000060 | Get ORF Coding potential... Type: noncoding Potential: -0.121 Folding energies... MFEI: -27.368 AMFE: -0.633 GC content %: 43.248 | |
| Tdicoccoides_TRIDC7AG034370.4 TRIDC7AG034370.4 |
Low | No | 1441 | OG0000060 | Get ORF Coding potential... Type: noncoding Potential: -0.310 Folding energies... MFEI: -27.765 AMFE: -0.643 GC content %: 43.164 | |
| Tdicoccoides_TRIDC7AG034370.5 TRIDC7AG034370.5 |
Low | No | 1325 | OG0000060 | Get ORF Coding potential... Type: noncoding Potential: -0.287 Folding energies... MFEI: -27.396 AMFE: -0.627 GC content %: 43.698 | |
| Tdicoccoides_TRIDC7AG034370.6 TRIDC7AG034370.6 |
Low | No | 1282 | OG0000060 | Get ORF Coding potential... Type: noncoding Potential: -0.406 Folding energies... MFEI: -27.785 AMFE: -0.625 GC content %: 44.462 | |
| Tdicoccoides_TRIDC7AG034370.7 TRIDC7AG034370.7 |
Low | No | 737 | OG0000060 | Get ORF Coding potential... Type: noncoding Potential: -1.211 Folding energies... MFEI: -26.147 AMFE: -0.580 GC content %: 45.047 | |
| Tdicoccoides_TRIDC7AG034370.8 TRIDC7AG034370.8 |
Low | No | 849 | OG0000060 | Get ORF Coding potential... Type: noncoding Potential: -1.057 Folding energies... MFEI: -25.265 AMFE: -0.577 GC content %: 43.816 | |
| Tdicoccoides_TRIDC7AG034370.9 TRIDC7AG034370.9 |
Low | No | 965 | OG0000060 | Get ORF Coding potential... Type: noncoding Potential: -1.103 Folding energies... MFEI: -26.104 AMFE: -0.607 GC content %: 43.005 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC7AG034370.6 | SwissProt | 2021-04-01 | Q5Z8Y4 | 2.18e-15 |
| Tdicoccoides_TRIDC7AG034370.21 | SwissProt | 2021-04-01 | Q5Z8Y4 | 5.54e-15 |
| Tdicoccoides_TRIDC7AG034370.17 | SwissProt | 2021-04-01 | Q5Z8Y4 | 3.81e-15 |
| Tdicoccoides_TRIDC7AG034370.31 | SwissProt | 2021-04-01 | Q5Z8Y4 | 1.08e-14 |
| Tdicoccoides_TRIDC7AG034370.12 | SwissProt | 2021-04-01 | Q5Z8Y4 | 1.74e-15 |
| Tdicoccoides_TRIDC7AG034370.27 | SwissProt | 2021-04-01 | Q5Z8Y4 | 9.12e-15 |
| Tdicoccoides_TRIDC7AG034370.7 | SwissProt | 2021-04-01 | A2YGP6 | 1.41e-6 |
| Tdicoccoides_TRIDC7AG034370.22 | SwissProt | 2021-04-01 | Q5Z8Y4 | 1.6e-15 |
| Tdicoccoides_TRIDC7AG034370.18 | SwissProt | 2021-04-01 | Q5Z8Y4 | 1.77e-15 |
| Tdicoccoides_TRIDC7AG034370.32 | SwissProt | 2021-04-01 | Q5Z8Y4 | 3.42e-15 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
