GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Tdicoccoides_TRIDC7AG057450 [ TRIDC7AG057450]	7A	599617419	599618713	v1	Triticum dicoccoides (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Tdicoccoides_TRIDC7AG057450.1 TRIDC7AG057450.1	High	No	1064	OG0023355		Get ORF Coding potential... Type: noncoding Potential: -0.894 Folding energies... MFEI: -23.120 AMFE: -0.604 GC content %: 38.252
Tdicoccoides_TRIDC7AG057450.2 TRIDC7AG057450.2	High	No	992	OG0023355		Get ORF Coding potential... Type: noncoding Potential: -0.878 Folding energies... MFEI: -22.954 AMFE: -0.582 GC content %: 39.415
Tdicoccoides_TRIDC7AG057450.5 TRIDC7AG057450.5	High	No	1112	OG0023355		Get ORF Coding potential... Type: noncoding Potential: -0.910 Folding energies... MFEI: -23.049 AMFE: -0.600 GC content %: 38.399

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).