Tdicoccoides TRIDC7AG058290
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC7AG058290 [ TRIDC7AG058290] |
7A | 606616429 | 606621346 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC7AG058290.10 TRIDC7AG058290.10 |
High | No | 2793 | OG0000856 | Get ORF Coding potential... Type: noncoding Potential: -0.989 Folding energies... MFEI: -29.144 AMFE: -0.652 GC content %: 44.683 | |
| Tdicoccoides_TRIDC7AG058290.11 TRIDC7AG058290.11 |
High | No | 2969 | OG0000856 | Get ORF Coding potential... Type: noncoding Potential: -0.993 Folding energies... MFEI: -28.481 AMFE: -0.653 GC content %: 43.584 | |
| Tdicoccoides_TRIDC7AG058290.13 TRIDC7AG058290.13 |
High | No | 1990 | OG0000856 | Get ORF Coding potential... Type: noncoding Potential: -0.964 Folding energies... MFEI: -30.573 AMFE: -0.661 GC content %: 46.231 | |
| Tdicoccoides_TRIDC7AG058290.14 TRIDC7AG058290.14 |
High | No | 2779 | OG0000856 | Get ORF Coding potential... Type: noncoding Potential: -0.989 Folding energies... MFEI: -28.874 AMFE: -0.647 GC content %: 44.656 | |
| Tdicoccoides_TRIDC7AG058290.17 TRIDC7AG058290.17 |
High | No | 2484 | OG0000856 | Get ORF Coding potential... Type: noncoding Potential: -0.963 Folding energies... MFEI: -29.243 AMFE: -0.640 GC content %: 45.692 | |
| Tdicoccoides_TRIDC7AG058290.18 TRIDC7AG058290.18 |
High | No | 1573 | OG0000856 | Get ORF Coding potential... Type: noncoding Potential: -1.139 Folding energies... MFEI: -31.189 AMFE: -0.680 GC content %: 45.900 | |
| Tdicoccoides_TRIDC7AG058290.19 TRIDC7AG058290.19 |
Low | No | 1049 | OG0000856 | Get ORF Coding potential... Type: noncoding Potential: -1.134 Folding energies... MFEI: -32.993 AMFE: -0.683 GC content %: 48.332 | |
| Tdicoccoides_TRIDC7AG058290.21 TRIDC7AG058290.21 |
High | No | 1739 | OG0000856 | Get ORF Coding potential... Type: noncoding Potential: -1.149 Folding energies... MFEI: -27.510 AMFE: -0.687 GC content %: 40.023 | |
| Tdicoccoides_TRIDC7AG058290.22 TRIDC7AG058290.22 |
High | No | 2000 | OG0000856 | Get ORF Coding potential... Type: noncoding Potential: -1.338 Folding energies... MFEI: -26.930 AMFE: -0.642 GC content %: 41.950 | |
| Tdicoccoides_TRIDC7AG058290.23 TRIDC7AG058290.23 |
High | No | 1835 | OG0000856 | Get ORF Coding potential... Type: noncoding Potential: -1.068 Folding energies... MFEI: -27.035 AMFE: -0.640 GC content %: 42.234 | |
| Tdicoccoides_TRIDC7AG058290.24 TRIDC7AG058290.24 |
High | No | 2641 | OG0000856 | Get ORF Coding potential... Type: noncoding Potential: -1.182 Folding energies... MFEI: -26.380 AMFE: -0.666 GC content %: 39.606 | |
| Tdicoccoides_TRIDC7AG058290.25 TRIDC7AG058290.25 |
High | No | 1607 | OG0000856 | Get ORF Coding potential... Type: noncoding Potential: -1.141 Folding energies... MFEI: -26.733 AMFE: -0.682 GC content %: 39.203 | |
| Tdicoccoides_TRIDC7AG058290.26 TRIDC7AG058290.26 |
High | No | 1522 | OG0000856 | Get ORF Coding potential... Type: noncoding Potential: -1.050 Folding energies... MFEI: -25.920 AMFE: -0.626 GC content %: 41.393 | |
| Tdicoccoides_TRIDC7AG058290.27 TRIDC7AG058290.27 |
High | No | 2186 | OG0000856 | Get ORF Coding potential... Type: noncoding Potential: -1.168 Folding energies... MFEI: -25.933 AMFE: -0.658 GC content %: 39.433 | |
| Tdicoccoides_TRIDC7AG058290.28 TRIDC7AG058290.28 |
High | No | 1357 | OG0000856 | Get ORF Coding potential... Type: noncoding Potential: -1.123 Folding energies... MFEI: -25.800 AMFE: -0.671 GC content %: 38.467 | |
| Tdicoccoides_TRIDC7AG058290.9 TRIDC7AG058290.9 |
High | No | 1274 | OG0000856 | Get ORF Coding potential... Type: noncoding Potential: -0.941 Folding energies... MFEI: -32.943 AMFE: -0.633 GC content %: 52.041 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC7AG058290.19 | SwissProt | 2021-04-01 | P54776 | 4.81e-4 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
