GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Tdicoccoides_TRIDC7AG059690 [ TRIDC7AG059690]	7A	618027890	618033673	v1	Triticum dicoccoides (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Tdicoccoides_TRIDC7AG059690.5 TRIDC7AG059690.5	High	No	1418	OG0023359		Get ORF Coding potential... Type: noncoding Potential: -1.080 Folding energies... MFEI: -31.227 AMFE: -0.655 GC content %: 47.673
Tdicoccoides_TRIDC7AG059690.6 TRIDC7AG059690.6	High	No	2237	OG0023359		Get ORF Coding potential... Type: noncoding Potential: -1.222 Folding energies... MFEI: -28.610 AMFE: -0.650 GC content %: 44.032
Tdicoccoides_TRIDC7AG059690.9 TRIDC7AG059690.9	High	No	888	OG0023359		Get ORF Coding potential... Type: noncoding Potential: -1.106 Folding energies... MFEI: -30.383 AMFE: -0.649 GC content %: 46.847

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).