Tdicoccoides TRIDC7BG003500
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC7BG003500 [ TRIDC7BG003500] |
7B | 25583462 | 25584959 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC7BG003500.1 TRIDC7BG003500.1 |
High | No | 1020 | OG0004565 | Get ORF Coding potential... Type: noncoding Potential: -0.909 Folding energies... MFEI: -30.706 AMFE: -0.662 GC content %: 46.373 | |
| Tdicoccoides_TRIDC7BG003500.2 TRIDC7BG003500.2 |
High | No | 867 | OG0004565 | Get ORF Coding potential... Type: noncoding Potential: -0.739 Folding energies... MFEI: -29.689 AMFE: -0.650 GC content %: 45.675 | |
| Tdicoccoides_TRIDC7BG003500.3 TRIDC7BG003500.3 |
High | No | 833 | OG0004565 | Get ORF Coding potential... Type: noncoding Potential: -0.559 Folding energies... MFEI: -31.693 AMFE: -0.655 GC content %: 48.379 | |
| Tdicoccoides_TRIDC7BG003500.4 TRIDC7BG003500.4 |
High | No | 885 | OG0004565 | Get ORF Coding potential... Type: noncoding Potential: -0.568 Folding energies... MFEI: -29.774 AMFE: -0.633 GC content %: 47.006 | |
| Tdicoccoides_TRIDC7BG003500.5 TRIDC7BG003500.5 |
High | No | 813 | OG0004565 | Get ORF Coding potential... Type: noncoding Potential: -0.502 Folding energies... MFEI: -31.943 AMFE: -0.644 GC content %: 49.569 | |
| Tdicoccoides_TRIDC7BG003500.6 TRIDC7BG003500.6 |
High | No | 986 | OG0004565 | Get ORF Coding potential... Type: noncoding Potential: -0.879 Folding energies... MFEI: -30.345 AMFE: -0.652 GC content %: 46.552 | |
| Tdicoccoides_TRIDC7BG003500.7 TRIDC7BG003500.7 |
High | No | 743 | OG0004565 | Get ORF Coding potential... Type: noncoding Potential: -0.404 Folding energies... MFEI: -41.844 AMFE: -0.673 GC content %: 62.180 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
