GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Tdicoccoides_TRIDC7BG005720 [ TRIDC7BG005720]	7B	40911475	40913056	v1	Triticum dicoccoides (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Tdicoccoides_TRIDC7BG005720.1 TRIDC7BG005720.1	Low	No	297	OG0367073		Get ORF Coding potential... Type: noncoding Potential: -1.269 Folding energies... MFEI: -32.862 AMFE: -0.533 GC content %: 61.616
Tdicoccoides_TRIDC7BG005720.3 TRIDC7BG005720.3	High	No	420	OG0367074		Get ORF Coding potential... Type: noncoding Potential: -1.135 Folding energies... MFEI: -30.310 AMFE: -0.598 GC content %: 50.714

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Tdicoccoides_TRIDC7BG005720.1	SwissProt	2021-04-01	Q7XHC4	8.39e-9

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).