Tdicoccoides TRIDC7BG007080
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC7BG007080 [ TRIDC7BG007080] |
7B | 51333096 | 51340455 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC7BG007080.1 TRIDC7BG007080.1 |
High | No | 732 | OG0000671 | Get ORF Coding potential... Type: noncoding Potential: -1.024 Folding energies... MFEI: -29.754 AMFE: -0.666 GC content %: 44.672 | |
| Tdicoccoides_TRIDC7BG007080.10 TRIDC7BG007080.10 |
High | No | 578 | OG0000671 | Get ORF Coding potential... Type: noncoding Potential: -0.915 Folding energies... MFEI: -29.689 AMFE: -0.650 GC content %: 45.675 | |
| Tdicoccoides_TRIDC7BG007080.11 TRIDC7BG007080.11 |
High | No | 644 | OG0000671 | Get ORF Coding potential... Type: noncoding Potential: -0.932 Folding energies... MFEI: -33.385 AMFE: -0.694 GC content %: 48.137 | |
| Tdicoccoides_TRIDC7BG007080.12 TRIDC7BG007080.12 |
High | No | 603 | OG0000671 | Get ORF Coding potential... Type: noncoding Potential: -0.926 Folding energies... MFEI: -31.194 AMFE: -0.669 GC content %: 46.600 | |
| Tdicoccoides_TRIDC7BG007080.13 TRIDC7BG007080.13 |
High | No | 511 | OG0000671 | Get ORF Coding potential... Type: noncoding Potential: -0.934 Folding energies... MFEI: -25.108 AMFE: -0.611 GC content %: 41.096 | |
| Tdicoccoides_TRIDC7BG007080.14 TRIDC7BG007080.14 |
High | No | 2062 | OG0000671 | Get ORF Coding potential... Type: noncoding Potential: -1.114 Folding energies... MFEI: -24.340 AMFE: -0.703 GC content %: 34.627 | |
| Tdicoccoides_TRIDC7BG007080.15 TRIDC7BG007080.15 |
High | No | 1866 | OG0000671 | Get ORF Coding potential... Type: noncoding Potential: -1.104 Folding energies... MFEI: -24.566 AMFE: -0.702 GC content %: 34.995 | |
| Tdicoccoides_TRIDC7BG007080.16 TRIDC7BG007080.16 |
High | No | 553 | OG0000671 | Get ORF Coding potential... Type: noncoding Potential: -1.048 Folding energies... MFEI: -24.177 AMFE: -0.679 GC content %: 35.624 | |
| Tdicoccoides_TRIDC7BG007080.17 TRIDC7BG007080.17 |
High | No | 358 | OG0000671 | Get ORF Coding potential... Type: noncoding Potential: -1.080 Folding energies... MFEI: -24.358 AMFE: -0.501 GC content %: 48.603 | |
| Tdicoccoides_TRIDC7BG007080.2 TRIDC7BG007080.2 |
High | No | 859 | OG0000671 | Get ORF Coding potential... Type: noncoding Potential: -1.058 Folding energies... MFEI: -31.735 AMFE: -0.701 GC content %: 45.285 | |
| Tdicoccoides_TRIDC7BG007080.3 TRIDC7BG007080.3 |
High | No | 830 | OG0000671 | Get ORF Coding potential... Type: noncoding Potential: -1.000 Folding energies... MFEI: -32.518 AMFE: -0.705 GC content %: 46.145 | |
| Tdicoccoides_TRIDC7BG007080.4 TRIDC7BG007080.4 |
High | No | 715 | OG0000671 | Get ORF Coding potential... Type: noncoding Potential: -0.946 Folding energies... MFEI: -31.580 AMFE: -0.672 GC content %: 46.993 | |
| Tdicoccoides_TRIDC7BG007080.5 TRIDC7BG007080.5 |
High | No | 577 | OG0000671 | Get ORF Coding potential... Type: noncoding Potential: -0.918 Folding energies... MFEI: -31.179 AMFE: -0.652 GC content %: 47.834 | |
| Tdicoccoides_TRIDC7BG007080.6 TRIDC7BG007080.6 |
High | No | 749 | OG0000671 | Get ORF Coding potential... Type: noncoding Potential: -0.978 Folding energies... MFEI: -31.856 AMFE: -0.678 GC content %: 46.996 | |
| Tdicoccoides_TRIDC7BG007080.7 TRIDC7BG007080.7 |
High | No | 778 | OG0000671 | Get ORF Coding potential... Type: noncoding Potential: -1.037 Folding energies... MFEI: -30.990 AMFE: -0.673 GC content %: 46.015 | |
| Tdicoccoides_TRIDC7BG007080.8 TRIDC7BG007080.8 |
High | No | 769 | OG0000671 | Get ORF Coding potential... Type: noncoding Potential: -0.728 Folding energies... MFEI: -31.287 AMFE: -0.678 GC content %: 46.164 | |
| Tdicoccoides_TRIDC7BG007080.9 TRIDC7BG007080.9 |
High | No | 700 | OG0000671 | Get ORF Coding potential... Type: noncoding Potential: -0.712 Folding energies... MFEI: -31.914 AMFE: -0.675 GC content %: 47.286 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
