Tdicoccoides TRIDC7BG008420
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC7BG008420 [ TRIDC7BG008420] |
7B | 64667250 | 64673730 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC7BG008420.1 TRIDC7BG008420.1 |
Low | No | 1293 | OG0002290 | Get ORF Coding potential... Type: noncoding Potential: -0.950 Folding energies... MFEI: -38.739 AMFE: -0.690 GC content %: 56.148 | |
| Tdicoccoides_TRIDC7BG008420.10 TRIDC7BG008420.10 |
Low | No | 1672 | OG0002290 | Get ORF Coding potential... Type: noncoding Potential: -1.227 Folding energies... MFEI: -30.987 AMFE: -0.698 GC content %: 44.378 | |
| Tdicoccoides_TRIDC7BG008420.2 TRIDC7BG008420.2 |
Low | No | 2326 | OG0002290 | Get ORF Coding potential... Type: noncoding Potential: -0.959 Folding energies... MFEI: -32.825 AMFE: -0.698 GC content %: 47.034 | |
| Tdicoccoides_TRIDC7BG008420.3 TRIDC7BG008420.3 |
Low | No | 2734 | OG0002290 | Get ORF Coding potential... Type: noncoding Potential: -0.879 Folding energies... MFEI: -31.108 AMFE: -0.684 GC content %: 45.465 | |
| Tdicoccoides_TRIDC7BG008420.4 TRIDC7BG008420.4 |
Low | No | 2925 | OG0002290 | Get ORF Coding potential... Type: noncoding Potential: -0.883 Folding energies... MFEI: -31.039 AMFE: -0.686 GC content %: 45.265 | |
| Tdicoccoides_TRIDC7BG008420.5 TRIDC7BG008420.5 |
Low | No | 2835 | OG0002290 | Get ORF Coding potential... Type: noncoding Potential: -0.881 Folding energies... MFEI: -31.168 AMFE: -0.685 GC content %: 45.503 | |
| Tdicoccoides_TRIDC7BG008420.6 TRIDC7BG008420.6 |
Low | No | 1372 | OG0002290 | Get ORF Coding potential... Type: noncoding Potential: -0.958 Folding energies... MFEI: -37.726 AMFE: -0.688 GC content %: 54.810 | |
| Tdicoccoides_TRIDC7BG008420.7 TRIDC7BG008420.7 |
Low | No | 1686 | OG0002290 | Get ORF Coding potential... Type: noncoding Potential: -0.842 Folding energies... MFEI: -31.738 AMFE: -0.663 GC content %: 47.865 | |
| Tdicoccoides_TRIDC7BG008420.8 TRIDC7BG008420.8 |
Low | No | 1987 | OG0002290 | Get ORF Coding potential... Type: noncoding Potential: -1.342 Folding energies... MFEI: -30.362 AMFE: -0.683 GC content %: 44.439 | |
| Tdicoccoides_TRIDC7BG008420.9 TRIDC7BG008420.9 |
Low | No | 2288 | OG0002290 | Get ORF Coding potential... Type: noncoding Potential: -0.867 Folding energies... MFEI: -29.148 AMFE: -0.682 GC content %: 42.745 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC7BG008420.9 | RepBase (RepeatMasker) | 2014-01-31 | LTR/ERV1 | |
| Tdicoccoides_TRIDC7BG008420.4 | RepBase (RepeatMasker) | 2014-01-31 | LTR/ERV1 | |
| Tdicoccoides_TRIDC7BG008420.5 | RepBase (RepeatMasker) | 2014-01-31 | LTR/ERV1 | |
| Tdicoccoides_TRIDC7BG008420.1 | RepBase (RepeatMasker) | 2014-01-31 | LTR/ERV1 | |
| Tdicoccoides_TRIDC7BG008420.6 | RepBase (RepeatMasker) | 2014-01-31 | LTR/ERV1 | |
| Tdicoccoides_TRIDC7BG008420.10 | RepBase (RepeatMasker) | 2014-01-31 | LTR/ERV1 | |
| Tdicoccoides_TRIDC7BG008420.7 | RepBase (RepeatMasker) | 2014-01-31 | LTR/ERV1 | |
| Tdicoccoides_TRIDC7BG008420.2 | RepBase (RepeatMasker) | 2014-01-31 | LTR/ERV1 | |
| Tdicoccoides_TRIDC7BG008420.8 | RepBase (RepeatMasker) | 2014-01-31 | LTR/ERV1 | |
| Tdicoccoides_TRIDC7BG008420.3 | RepBase (RepeatMasker) | 2014-01-31 | LTR/ERV1 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
