Tdicoccoides TRIDC7BG010580
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC7BG010580 [ TRIDC7BG010580] |
7B | 82061023 | 82069914 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC7BG010580.1 TRIDC7BG010580.1 |
High | No | 1656 | OG0000155 | Get ORF Coding potential... Type: noncoding Potential: -0.912 Folding energies... MFEI: -27.899 AMFE: -0.617 GC content %: 45.229 | |
| Tdicoccoides_TRIDC7BG010580.10 TRIDC7BG010580.10 |
High | No | 2247 | OG0000155 | Get ORF Coding potential... Type: noncoding Potential: -0.947 Folding energies... MFEI: -24.864 AMFE: -0.607 GC content %: 40.943 | |
| Tdicoccoides_TRIDC7BG010580.11 TRIDC7BG010580.11 |
High | No | 1811 | OG0000155 | Get ORF Coding potential... Type: noncoding Potential: -0.905 Folding energies... MFEI: -25.273 AMFE: -0.613 GC content %: 41.248 | |
| Tdicoccoides_TRIDC7BG010580.12 TRIDC7BG010580.12 |
High | No | 1768 | OG0000155 | Get ORF Coding potential... Type: noncoding Potential: -0.920 Folding energies... MFEI: -26.109 AMFE: -0.622 GC content %: 41.968 | |
| Tdicoccoides_TRIDC7BG010580.13 TRIDC7BG010580.13 |
High | No | 3906 | OG0000155 | Get ORF Coding potential... Type: noncoding Potential: -0.974 Folding energies... MFEI: -25.888 AMFE: -0.651 GC content %: 39.785 | |
| Tdicoccoides_TRIDC7BG010580.14 TRIDC7BG010580.14 |
Low | No | 1981 | OG0000155 | Get ORF Coding potential... Type: noncoding Potential: -0.915 Folding energies... MFEI: -28.062 AMFE: -0.627 GC content %: 44.725 | |
| Tdicoccoides_TRIDC7BG010580.15 TRIDC7BG010580.15 |
High | No | 1601 | OG0000155 | Get ORF Coding potential... Type: noncoding Potential: -0.975 Folding energies... MFEI: -26.508 AMFE: -0.632 GC content %: 41.974 | |
| Tdicoccoides_TRIDC7BG010580.16 TRIDC7BG010580.16 |
Low | No | 2585 | OG0000155 | Get ORF Coding potential... Type: noncoding Potential: -1.036 Folding energies... MFEI: -27.861 AMFE: -0.657 GC content %: 42.398 | |
| Tdicoccoides_TRIDC7BG010580.17 TRIDC7BG010580.17 |
High | No | 1682 | OG0000155 | Get ORF Coding potential... Type: noncoding Potential: -0.917 Folding energies... MFEI: -25.743 AMFE: -0.620 GC content %: 41.498 | |
| Tdicoccoides_TRIDC7BG010580.18 TRIDC7BG010580.18 |
High | No | 2685 | OG0000155 | Get ORF Coding potential... Type: noncoding Potential: -0.945 Folding energies... MFEI: -25.940 AMFE: -0.649 GC content %: 40.000 | |
| Tdicoccoides_TRIDC7BG010580.19 TRIDC7BG010580.19 |
High | No | 1647 | OG0000155 | Get ORF Coding potential... Type: noncoding Potential: -0.894 Folding energies... MFEI: -25.871 AMFE: -0.621 GC content %: 41.651 | |
| Tdicoccoides_TRIDC7BG010580.2 TRIDC7BG010580.2 |
High | No | 1144 | OG0000155 | Get ORF Coding potential... Type: noncoding Potential: -0.849 Folding energies... MFEI: -26.836 AMFE: -0.596 GC content %: 45.017 | |
| Tdicoccoides_TRIDC7BG010580.20 TRIDC7BG010580.20 |
High | No | 1053 | OG0000155 | Get ORF Coding potential... Type: noncoding Potential: -0.676 Folding energies... MFEI: -25.698 AMFE: -0.582 GC content %: 44.160 | |
| Tdicoccoides_TRIDC7BG010580.21 TRIDC7BG010580.21 |
High | No | 1418 | OG0000155 | Get ORF Coding potential... Type: noncoding Potential: -0.875 Folding energies... MFEI: -24.993 AMFE: -0.593 GC content %: 42.172 | |
| Tdicoccoides_TRIDC7BG010580.22 TRIDC7BG010580.22 |
High | No | 1146 | OG0000155 | Get ORF Coding potential... Type: noncoding Potential: -0.848 Folding energies... MFEI: -25.908 AMFE: -0.610 GC content %: 42.496 | |
| Tdicoccoides_TRIDC7BG010580.23 TRIDC7BG010580.23 |
High | No | 1449 | OG0000155 | Get ORF Coding potential... Type: noncoding Potential: -0.878 Folding energies... MFEI: -23.989 AMFE: -0.590 GC content %: 40.649 | |
| Tdicoccoides_TRIDC7BG010580.24 TRIDC7BG010580.24 |
High | No | 980 | OG0000155 | Get ORF Coding potential... Type: noncoding Potential: -0.828 Folding energies... MFEI: -26.010 AMFE: -0.579 GC content %: 44.898 | |
| Tdicoccoides_TRIDC7BG010580.25 TRIDC7BG010580.25 |
High | No | 1318 | OG0000155 | Get ORF Coding potential... Type: noncoding Potential: -0.866 Folding energies... MFEI: -26.290 AMFE: -0.609 GC content %: 43.171 | |
| Tdicoccoides_TRIDC7BG010580.26 TRIDC7BG010580.26 |
High | No | 714 | OG0000155 | Get ORF Coding potential... Type: noncoding Potential: -0.725 Folding energies... MFEI: -24.552 AMFE: -0.573 GC content %: 42.857 | |
| Tdicoccoides_TRIDC7BG010580.27 TRIDC7BG010580.27 |
Low | No | 1399 | OG0000155 | Get ORF Coding potential... Type: noncoding Potential: -0.874 Folding energies... MFEI: -27.627 AMFE: -0.612 GC content %: 45.175 | |
| Tdicoccoides_TRIDC7BG010580.28 TRIDC7BG010580.28 |
High | No | 1074 | OG0000155 | Get ORF Coding potential... Type: noncoding Potential: -0.839 Folding energies... MFEI: -28.128 AMFE: -0.598 GC content %: 47.020 | |
| Tdicoccoides_TRIDC7BG010580.29 TRIDC7BG010580.29 |
Low | No | 1123 | OG0000155 | Get ORF Coding potential... Type: noncoding Potential: -1.100 Folding energies... MFEI: -27.854 AMFE: -0.645 GC content %: 43.188 | |
| Tdicoccoides_TRIDC7BG010580.3 TRIDC7BG010580.3 |
High | No | 1587 | OG0000155 | Get ORF Coding potential... Type: noncoding Potential: -0.889 Folding energies... MFEI: -24.802 AMFE: -0.587 GC content %: 42.281 | |
| Tdicoccoides_TRIDC7BG010580.30 TRIDC7BG010580.30 |
Low | No | 1742 | OG0000155 | Get ORF Coding potential... Type: noncoding Potential: -1.067 Folding energies... MFEI: -30.144 AMFE: -0.671 GC content %: 44.891 | |
| Tdicoccoides_TRIDC7BG010580.31 TRIDC7BG010580.31 |
High | No | 1206 | OG0000155 | Get ORF Coding potential... Type: noncoding Potential: -1.145 Folding energies... MFEI: -29.519 AMFE: -0.674 GC content %: 43.781 | |
| Tdicoccoides_TRIDC7BG010580.32 TRIDC7BG010580.32 |
Low | No | 2495 | OG0000155 | Get ORF Coding potential... Type: noncoding Potential: -1.105 Folding energies... MFEI: -28.032 AMFE: -0.672 GC content %: 41.683 | |
| Tdicoccoides_TRIDC7BG010580.33 TRIDC7BG010580.33 |
Low | No | 2633 | OG0000155 | Get ORF Coding potential... Type: noncoding Potential: -1.178 Folding energies... MFEI: -27.869 AMFE: -0.670 GC content %: 41.626 | |
| Tdicoccoides_TRIDC7BG010580.34 TRIDC7BG010580.34 |
Low | No | 1046 | OG0000155 | Get ORF Coding potential... Type: noncoding Potential: -1.224 Folding energies... MFEI: -25.421 AMFE: -0.624 GC content %: 40.727 | |
| Tdicoccoides_TRIDC7BG010580.4 TRIDC7BG010580.4 |
High | No | 1386 | OG0000155 | Get ORF Coding potential... Type: noncoding Potential: -0.905 Folding energies... MFEI: -28.853 AMFE: -0.642 GC content %: 44.949 | |
| Tdicoccoides_TRIDC7BG010580.5 TRIDC7BG010580.5 |
High | No | 1413 | OG0000155 | Get ORF Coding potential... Type: noncoding Potential: -0.875 Folding energies... MFEI: -24.720 AMFE: -0.577 GC content %: 42.817 | |
| Tdicoccoides_TRIDC7BG010580.6 TRIDC7BG010580.6 |
Low | No | 4033 | OG0000155 | Get ORF Coding potential... Type: noncoding Potential: -0.976 Folding energies... MFEI: -26.345 AMFE: -0.644 GC content %: 40.888 | |
| Tdicoccoides_TRIDC7BG010580.7 TRIDC7BG010580.7 |
High | No | 2028 | OG0000155 | Get ORF Coding potential... Type: noncoding Potential: -0.917 Folding energies... MFEI: -24.837 AMFE: -0.603 GC content %: 41.174 | |
| Tdicoccoides_TRIDC7BG010580.8 TRIDC7BG010580.8 |
High | No | 1892 | OG0000155 | Get ORF Coding potential... Type: noncoding Potential: -0.910 Folding energies... MFEI: -25.486 AMFE: -0.606 GC content %: 42.072 | |
| Tdicoccoides_TRIDC7BG010580.9 TRIDC7BG010580.9 |
High | No | 3140 | OG0000155 | Get ORF Coding potential... Type: noncoding Potential: -0.958 Folding energies... MFEI: -25.344 AMFE: -0.629 GC content %: 40.287 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC7BG010580.33 | SwissProt | 2021-04-01 | Q75GR5 | 4.17e-4 |
| Tdicoccoides_TRIDC7BG010580.16 | SwissProt | 2021-04-01 | Q75GR5 | 3.83e-4 |
| Tdicoccoides_TRIDC7BG010580.34 | SwissProt | 2021-04-01 | Q75GR5 | 1.28e-4 |
| Tdicoccoides_TRIDC7BG010580.27 | SwissProt | 2021-04-01 | Q75GR5 | 2.25e-4 |
| Tdicoccoides_TRIDC7BG010580.6 | SwissProt | 2021-04-01 | Q75GR5 | 6.55e-4 |
| Tdicoccoides_TRIDC7BG010580.29 | SwissProt | 2021-04-01 | Q75GR5 | 2.07e-4 |
| Tdicoccoides_TRIDC7BG010580.30 | SwissProt | 2021-04-01 | Q75GR5 | 3.57e-4 |
| Tdicoccoides_TRIDC7BG010580.32 | SwissProt | 2021-04-01 | Q75GR5 | 3.95e-4 |
| Tdicoccoides_TRIDC7BG010580.14 | SwissProt | 2021-04-01 | Q75GR5 | 4.12e-4 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
