Tdicoccoides TRIDC7BG020560
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC7BG020560 [ TRIDC7BG020560] |
7B | 172062834 | 172066833 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC7BG020560.15 TRIDC7BG020560.15 |
High | No | 1443 | OG0001932 | Get ORF Coding potential... Type: noncoding Potential: -0.238 Folding energies... MFEI: -26.722 AMFE: -0.636 GC content %: 41.996 | |
| Tdicoccoides_TRIDC7BG020560.18 TRIDC7BG020560.18 |
High | No | 1340 | OG0367299 | Get ORF Coding potential... Type: noncoding Potential: -0.384 Folding energies... MFEI: -26.754 AMFE: -0.658 GC content %: 40.672 | |
| Tdicoccoides_TRIDC7BG020560.19 TRIDC7BG020560.19 |
High | No | 1497 | OG0001932 | Get ORF Coding potential... Type: noncoding Potential: -0.291 Folding energies... MFEI: -27.876 AMFE: -0.661 GC content %: 42.151 | |
| Tdicoccoides_TRIDC7BG020560.2 TRIDC7BG020560.2 |
Low | Yes | 1155 | OG0001932 | Get ORF Coding potential... Type: noncoding Potential: -0.581 Folding energies... MFEI: -27.905 AMFE: -0.651 GC content %: 42.857 | |
| Tdicoccoides_TRIDC7BG020560.21 TRIDC7BG020560.21 |
High | No | 974 | OG0001932 | Get ORF Coding potential... Type: noncoding Potential: -0.858 Folding energies... MFEI: -24.107 AMFE: -0.562 GC content %: 42.916 | |
| Tdicoccoides_TRIDC7BG020560.22 TRIDC7BG020560.22 |
High | No | 1061 | OG0001932 | Get ORF Coding potential... Type: noncoding Potential: -1.175 Folding energies... MFEI: -24.543 AMFE: -0.566 GC content %: 43.355 | |
| Tdicoccoides_TRIDC7BG020560.23 TRIDC7BG020560.23 |
High | No | 427 | OG0001932 | Get ORF Coding potential... Type: noncoding Potential: -0.888 Folding energies... MFEI: -20.843 AMFE: -0.511 GC content %: 40.749 | |
| Tdicoccoides_TRIDC7BG020560.4 TRIDC7BG020560.4 |
High | No | 1601 | OG0001932 | Get ORF Coding potential... Type: noncoding Potential: -0.050 Folding energies... MFEI: -30.381 AMFE: -0.666 GC content %: 45.597 | |
| Tdicoccoides_TRIDC7BG020560.9 TRIDC7BG020560.9 |
Low | Yes | 1304 | OG0001932 | Get ORF Coding potential... Type: noncoding Potential: -0.744 Folding energies... MFEI: -27.400 AMFE: -0.647 GC content %: 42.331 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC7BG020560.2 | Rfam | 14.6 | mir-44 | 0.0087 |
| Tdicoccoides_TRIDC7BG020560.9 | Rfam | 14.6 | mir-44 | 0.0098 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
