Tdicoccoides TRIDC7BG023190
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC7BG023190 [ TRIDC7BG023190] |
7B | 207266065 | 207271355 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC7BG023190.1 TRIDC7BG023190.1 |
High | No | 1098 | OG0000753 | Get ORF Coding potential... Type: noncoding Potential: -1.374 Folding energies... MFEI: -20.656 AMFE: -0.603 GC content %: 34.244 | |
| Tdicoccoides_TRIDC7BG023190.10 TRIDC7BG023190.10 |
High | No | 2470 | OG0000753 | Get ORF Coding potential... Type: noncoding Potential: -1.175 Folding energies... MFEI: -30.794 AMFE: -0.669 GC content %: 46.032 | |
| Tdicoccoides_TRIDC7BG023190.11 TRIDC7BG023190.11 |
High | No | 2750 | OG0000753 | Get ORF Coding potential... Type: noncoding Potential: -1.217 Folding energies... MFEI: -30.855 AMFE: -0.694 GC content %: 44.436 | |
| Tdicoccoides_TRIDC7BG023190.12 TRIDC7BG023190.12 |
High | No | 823 | OG0000753 | Get ORF Coding potential... Type: noncoding Potential: -1.028 Folding energies... MFEI: -27.047 AMFE: -0.659 GC content %: 41.069 | |
| Tdicoccoides_TRIDC7BG023190.13 TRIDC7BG023190.13 |
High | No | 1981 | OG0000753 | Get ORF Coding potential... Type: noncoding Potential: -1.154 Folding energies... MFEI: -26.199 AMFE: -0.700 GC content %: 37.405 | |
| Tdicoccoides_TRIDC7BG023190.14 TRIDC7BG023190.14 |
High | No | 3300 | OG0000753 | Get ORF Coding potential... Type: noncoding Potential: -1.233 Folding energies... MFEI: -30.606 AMFE: -0.714 GC content %: 42.848 | |
| Tdicoccoides_TRIDC7BG023190.15 TRIDC7BG023190.15 |
High | No | 4298 | OG0000753 | Get ORF Coding potential... Type: noncoding Potential: -1.212 Folding energies... MFEI: -29.093 AMFE: -0.699 GC content %: 41.624 | |
| Tdicoccoides_TRIDC7BG023190.16 TRIDC7BG023190.16 |
High | No | 2230 | OG0000753 | Get ORF Coding potential... Type: noncoding Potential: -1.166 Folding energies... MFEI: -32.619 AMFE: -0.697 GC content %: 46.771 | |
| Tdicoccoides_TRIDC7BG023190.17 TRIDC7BG023190.17 |
High | No | 1588 | OG0000753 | Get ORF Coding potential... Type: noncoding Potential: -1.131 Folding energies... MFEI: -34.433 AMFE: -0.674 GC content %: 51.071 | |
| Tdicoccoides_TRIDC7BG023190.2 TRIDC7BG023190.2 |
High | No | 1592 | OG0000753 | Get ORF Coding potential... Type: noncoding Potential: -1.153 Folding energies... MFEI: -34.435 AMFE: -0.686 GC content %: 50.188 | |
| Tdicoccoides_TRIDC7BG023190.3 TRIDC7BG023190.3 |
High | No | 2499 | OG0000753 | Get ORF Coding potential... Type: noncoding Potential: -1.208 Folding energies... MFEI: -30.696 AMFE: -0.676 GC content %: 45.418 | |
| Tdicoccoides_TRIDC7BG023190.4 TRIDC7BG023190.4 |
High | No | 1682 | OG0000753 | Get ORF Coding potential... Type: noncoding Potential: -1.136 Folding energies... MFEI: -33.775 AMFE: -0.678 GC content %: 49.822 | |
| Tdicoccoides_TRIDC7BG023190.5 TRIDC7BG023190.5 |
High | No | 3659 | OG0000753 | Get ORF Coding potential... Type: noncoding Potential: -1.240 Folding energies... MFEI: -29.161 AMFE: -0.691 GC content %: 42.225 | |
| Tdicoccoides_TRIDC7BG023190.6 TRIDC7BG023190.6 |
High | No | 3744 | OG0000753 | Get ORF Coding potential... Type: noncoding Potential: -1.204 Folding energies... MFEI: -29.292 AMFE: -0.689 GC content %: 42.495 | |
| Tdicoccoides_TRIDC7BG023190.7 TRIDC7BG023190.7 |
High | No | 2854 | OG0000753 | Get ORF Coding potential... Type: noncoding Potential: -1.221 Folding energies... MFEI: -30.855 AMFE: -0.693 GC content %: 44.534 | |
| Tdicoccoides_TRIDC7BG023190.8 TRIDC7BG023190.8 |
High | No | 4462 | OG0000753 | Get ORF Coding potential... Type: noncoding Potential: -1.211 Folding energies... MFEI: -29.292 AMFE: -0.701 GC content %: 41.775 | |
| Tdicoccoides_TRIDC7BG023190.9 TRIDC7BG023190.9 |
High | No | 4039 | OG0000753 | Get ORF Coding potential... Type: noncoding Potential: -1.209 Folding energies... MFEI: -28.455 AMFE: -0.687 GC content %: 41.421 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
