Tdicoccoides TRIDC7BG024780
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC7BG024780 [ TRIDC7BG024780] |
7B | 228200854 | 228203998 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC7BG024780.1 TRIDC7BG024780.1 |
Low | No | 1069 | OG0015476 | Get ORF Coding potential... Type: noncoding Potential: -1.235 Folding energies... MFEI: -27.325 AMFE: -0.651 GC content %: 42.002 | |
| Tdicoccoides_TRIDC7BG024780.13 TRIDC7BG024780.13 |
Low | No | 260 | OG0367366 | Get ORF Coding potential... Type: noncoding Potential: -1.087 Folding energies... MFEI: -25.231 AMFE: -0.538 GC content %: 46.923 | |
| Tdicoccoides_TRIDC7BG024780.2 TRIDC7BG024780.2 |
High | No | 1913 | OG0015476 | Get ORF Coding potential... Type: noncoding Potential: -0.951 Folding energies... MFEI: -31.908 AMFE: -0.686 GC content %: 46.524 | |
| Tdicoccoides_TRIDC7BG024780.5 TRIDC7BG024780.5 |
Low | No | 1726 | OG0015476 | Get ORF Coding potential... Type: noncoding Potential: -0.942 Folding energies... MFEI: -31.883 AMFE: -0.665 GC content %: 47.914 | |
| Tdicoccoides_TRIDC7BG024780.6 TRIDC7BG024780.6 |
Low | No | 1856 | OG0015476 | Get ORF Coding potential... Type: noncoding Potential: -0.949 Folding energies... MFEI: -31.983 AMFE: -0.682 GC content %: 46.929 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC7BG024780.1 | SwissProt | 2021-04-01 | Q949G5 | 3.05e-10 |
| Tdicoccoides_TRIDC7BG024780.13 | SwissProt | 2021-04-01 | Q6NRC9 | 2.02e-4 |
| Tdicoccoides_TRIDC7BG024780.5 | SwissProt | 2021-04-01 | Q949G5 | 5.66e-10 |
| Tdicoccoides_TRIDC7BG024780.6 | SwissProt | 2021-04-01 | Q949G5 | 6.15e-10 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
