Tdicoccoides TRIDC7BG024780

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Tdicoccoides_TRIDC7BG024780
[ TRIDC7BG024780]
7B 228200854 228203998 v1 Triticum dicoccoides (Ensembl Plants 51)
Coding?
Yes


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Tdicoccoides_TRIDC7BG024780.1
TRIDC7BG024780.1
Low No 1069 OG0015476
Coding potential...
Type: noncoding Potential: -1.235
Folding energies...
MFEI: -27.325 AMFE: -0.651
GC content
%: 42.002
Tdicoccoides_TRIDC7BG024780.13
TRIDC7BG024780.13
Low No 260 OG0367366
Coding potential...
Type: noncoding Potential: -1.087
Folding energies...
MFEI: -25.231 AMFE: -0.538
GC content
%: 46.923
Tdicoccoides_TRIDC7BG024780.2
TRIDC7BG024780.2
High No 1913 OG0015476
Coding potential...
Type: noncoding Potential: -0.951
Folding energies...
MFEI: -31.908 AMFE: -0.686
GC content
%: 46.524
Tdicoccoides_TRIDC7BG024780.5
TRIDC7BG024780.5
Low No 1726 OG0015476
Coding potential...
Type: noncoding Potential: -0.942
Folding energies...
MFEI: -31.883 AMFE: -0.665
GC content
%: 47.914
Tdicoccoides_TRIDC7BG024780.6
TRIDC7BG024780.6
Low No 1856 OG0015476
Coding potential...
Type: noncoding Potential: -0.949
Folding energies...
MFEI: -31.983 AMFE: -0.682
GC content
%: 46.929


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Tdicoccoides_TRIDC7BG024780.5  SwissProt 2021-04-01 Q949G5 5.66e-10
Tdicoccoides_TRIDC7BG024780.6  SwissProt 2021-04-01 Q949G5 6.15e-10
Tdicoccoides_TRIDC7BG024780.1  SwissProt 2021-04-01 Q949G5 3.05e-10
Tdicoccoides_TRIDC7BG024780.13  SwissProt 2021-04-01 Q6NRC9 2.02e-4


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Tdicoccoides_TRIDC7BG024780.png