Tdicoccoides TRIDC7BG032420
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC7BG032420 [ TRIDC7BG032420] |
7B | 361949564 | 361953279 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC7BG032420.2 TRIDC7BG032420.2 |
High | No | 1642 | OG0004566 | Get ORF Coding potential... Type: noncoding Potential: -0.982 Folding energies... MFEI: -29.805 AMFE: -0.692 GC content %: 43.057 | |
| Tdicoccoides_TRIDC7BG032420.24 TRIDC7BG032420.24 |
High | No | 1917 | OG0004566 | Get ORF Coding potential... Type: noncoding Potential: -0.844 Folding energies... MFEI: -30.292 AMFE: -0.682 GC content %: 44.444 | |
| Tdicoccoides_TRIDC7BG032420.3 TRIDC7BG032420.3 |
High | No | 1297 | OG0004566 | Get ORF Coding potential... Type: noncoding Potential: -0.956 Folding energies... MFEI: -31.288 AMFE: -0.696 GC content %: 44.950 | |
| Tdicoccoides_TRIDC7BG032420.38 TRIDC7BG032420.38 |
High | No | 1347 | OG0004566 | Get ORF Coding potential... Type: noncoding Potential: -1.044 Folding energies... MFEI: -25.702 AMFE: -0.661 GC content %: 38.901 | |
| Tdicoccoides_TRIDC7BG032420.39 TRIDC7BG032420.39 |
High | No | 784 | OG0062898 | Get ORF Coding potential... Type: noncoding Potential: -0.722 Folding energies... MFEI: -35.497 AMFE: -0.613 GC content %: 57.908 | |
| Tdicoccoides_TRIDC7BG032420.40 TRIDC7BG032420.40 |
High | No | 684 | OG0062898 | Get ORF Coding potential... Type: noncoding Potential: -0.905 Folding energies... MFEI: -35.395 AMFE: -0.613 GC content %: 57.749 | |
| Tdicoccoides_TRIDC7BG032420.6 TRIDC7BG032420.6 |
High | No | 1428 | OG0004566 | Get ORF Coding potential... Type: noncoding Potential: -0.812 Folding energies... MFEI: -31.569 AMFE: -0.687 GC content %: 45.938 | |
| Tdicoccoides_TRIDC7BG032420.7 TRIDC7BG032420.7 |
High | No | 1664 | OG0004566 | Get ORF Coding potential... Type: noncoding Potential: -0.829 Folding energies... MFEI: -31.304 AMFE: -0.688 GC content %: 45.493 | |
| Tdicoccoides_TRIDC7BG032420.9 TRIDC7BG032420.9 |
High | No | 1528 | OG0004566 | Get ORF Coding potential... Type: noncoding Potential: -0.820 Folding energies... MFEI: -31.257 AMFE: -0.678 GC content %: 46.073 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
