Tdicoccoides TRIDC7BG032820
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC7BG032820 [ TRIDC7BG032820] |
7B | 367876724 | 367888237 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC7BG032820.1 TRIDC7BG032820.1 |
Low | No | 3005 | OG0001513 | Get ORF Coding potential... Type: noncoding Potential: -0.936 Folding energies... MFEI: -33.052 AMFE: -0.699 GC content %: 47.288 | |
| Tdicoccoides_TRIDC7BG032820.10 TRIDC7BG032820.10 |
Low | No | 1039 | OG0001513 | Get ORF Coding potential... Type: noncoding Potential: -0.718 Folding energies... MFEI: -30.279 AMFE: -0.669 GC content %: 45.236 | |
| Tdicoccoides_TRIDC7BG032820.11 TRIDC7BG032820.11 |
Low | No | 1944 | OG0001513 | Get ORF Coding potential... Type: noncoding Potential: -1.137 Folding energies... MFEI: -29.198 AMFE: -0.703 GC content %: 41.512 | |
| Tdicoccoides_TRIDC7BG032820.12 TRIDC7BG032820.12 |
Low | No | 2016 | OG0001513 | Get ORF Coding potential... Type: noncoding Potential: -1.138 Folding energies... MFEI: -28.909 AMFE: -0.710 GC content %: 40.724 | |
| Tdicoccoides_TRIDC7BG032820.2 TRIDC7BG032820.2 |
Low | No | 4314 | OG0001513 | Get ORF Coding potential... Type: noncoding Potential: -1.263 Folding energies... MFEI: -31.066 AMFE: -0.708 GC content %: 43.857 | |
| Tdicoccoides_TRIDC7BG032820.3 TRIDC7BG032820.3 |
Low | No | 897 | OG0001513 | Get ORF Coding potential... Type: noncoding Potential: -0.846 Folding energies... MFEI: -35.708 AMFE: -0.658 GC content %: 54.292 | |
| Tdicoccoides_TRIDC7BG032820.4 TRIDC7BG032820.4 |
Low | No | 3435 | OG0001513 | Get ORF Coding potential... Type: noncoding Potential: -1.182 Folding energies... MFEI: -29.904 AMFE: -0.695 GC content %: 42.999 | |
| Tdicoccoides_TRIDC7BG032820.5 TRIDC7BG032820.5 |
Low | No | 1764 | OG0001513 | Get ORF Coding potential... Type: noncoding Potential: -1.131 Folding energies... MFEI: -31.247 AMFE: -0.691 GC content %: 45.238 | |
| Tdicoccoides_TRIDC7BG032820.6 TRIDC7BG032820.6 |
Low | No | 2204 | OG0001513 | Get ORF Coding potential... Type: noncoding Potential: -1.143 Folding energies... MFEI: -30.626 AMFE: -0.705 GC content %: 43.466 | |
| Tdicoccoides_TRIDC7BG032820.7 TRIDC7BG032820.7 |
Low | No | 984 | OG0001513 | Get ORF Coding potential... Type: noncoding Potential: -0.856 Folding energies... MFEI: -33.963 AMFE: -0.654 GC content %: 51.931 | |
| Tdicoccoides_TRIDC7BG032820.8 TRIDC7BG032820.8 |
Low | No | 3450 | OG0001513 | Get ORF Coding potential... Type: noncoding Potential: -1.251 Folding energies... MFEI: -29.183 AMFE: -0.686 GC content %: 42.522 | |
| Tdicoccoides_TRIDC7BG032820.9 TRIDC7BG032820.9 |
Low | No | 2553 | OG0001513 | Get ORF Coding potential... Type: noncoding Potential: -1.186 Folding energies... MFEI: -28.703 AMFE: -0.695 GC content %: 41.285 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC7BG032820.10 | SwissProt | 2021-04-01 | F4IE66 | 9.66e-9 |
| Tdicoccoides_TRIDC7BG032820.5 | SwissProt | 2021-04-01 | F4IE66 | 5.44e-9 |
| Tdicoccoides_TRIDC7BG032820.11 | SwissProt | 2021-04-01 | F4IE66 | 9.88e-9 |
| Tdicoccoides_TRIDC7BG032820.6 | SwissProt | 2021-04-01 | F4IE66 | 7.81e-9 |
| Tdicoccoides_TRIDC7BG032820.12 | SwissProt | 2021-04-01 | Q9FUY2 | 1.53e-5 |
| Tdicoccoides_TRIDC7BG032820.7 | SwissProt | 2021-04-01 | F4IE66 | 8.14e-9 |
| Tdicoccoides_TRIDC7BG032820.2 | SwissProt | 2021-04-01 | F4IE66 | 1.05e-7 |
| Tdicoccoides_TRIDC7BG032820.8 | SwissProt | 2021-04-01 | F4IE66 | 7.98e-8 |
| Tdicoccoides_TRIDC7BG032820.3 | SwissProt | 2021-04-01 | F4IE66 | 9.7e-10 |
| Tdicoccoides_TRIDC7BG032820.1 | SwissProt | 2021-04-01 | F4IE66 | 6.69e-8 |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
