Tdicoccoides TRIDC7BG041420
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC7BG041420 [ TRIDC7BG041420] |
7B | 471321259 | 471327006 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC7BG041420.1 TRIDC7BG041420.1 |
High | No | 4611 | OG0000607 | Get ORF Coding potential... Type: noncoding Potential: -1.006 Folding energies... MFEI: -32.325 AMFE: -0.682 GC content %: 47.408 | |
| Tdicoccoides_TRIDC7BG041420.10 TRIDC7BG041420.10 |
High | No | 3877 | OG0000607 | Get ORF Coding potential... Type: noncoding Potential: -0.990 Folding energies... MFEI: -33.588 AMFE: -0.675 GC content %: 49.755 | |
| Tdicoccoides_TRIDC7BG041420.11 TRIDC7BG041420.11 |
High | No | 3456 | OG0000607 | Get ORF Coding potential... Type: noncoding Potential: -0.978 Folding energies... MFEI: -34.615 AMFE: -0.679 GC content %: 51.013 | |
| Tdicoccoides_TRIDC7BG041420.12 TRIDC7BG041420.12 |
High | No | 4258 | OG0000607 | Get ORF Coding potential... Type: noncoding Potential: -0.999 Folding energies... MFEI: -32.273 AMFE: -0.671 GC content %: 48.074 | |
| Tdicoccoides_TRIDC7BG041420.13 TRIDC7BG041420.13 |
High | No | 2662 | OG0000607 | Get ORF Coding potential... Type: noncoding Potential: -1.244 Folding energies... MFEI: -27.791 AMFE: -0.632 GC content %: 43.952 | |
| Tdicoccoides_TRIDC7BG041420.14 TRIDC7BG041420.14 |
High | No | 3257 | OG0000607 | Get ORF Coding potential... Type: noncoding Potential: -0.972 Folding energies... MFEI: -35.373 AMFE: -0.679 GC content %: 52.134 | |
| Tdicoccoides_TRIDC7BG041420.15 TRIDC7BG041420.15 |
High | No | 3615 | OG0000607 | Get ORF Coding potential... Type: noncoding Potential: -0.983 Folding energies... MFEI: -33.895 AMFE: -0.675 GC content %: 50.235 | |
| Tdicoccoides_TRIDC7BG041420.16 TRIDC7BG041420.16 |
High | No | 3866 | OG0000607 | Get ORF Coding potential... Type: noncoding Potential: -0.990 Folding energies... MFEI: -33.502 AMFE: -0.677 GC content %: 49.509 | |
| Tdicoccoides_TRIDC7BG041420.17 TRIDC7BG041420.17 |
High | No | 2807 | OG0000607 | Get ORF Coding potential... Type: noncoding Potential: -0.901 Folding energies... MFEI: -31.528 AMFE: -0.643 GC content %: 49.020 | |
| Tdicoccoides_TRIDC7BG041420.18 TRIDC7BG041420.18 |
High | No | 1686 | OG0000607 | Get ORF Coding potential... Type: noncoding Potential: -1.213 Folding energies... MFEI: -27.598 AMFE: -0.579 GC content %: 47.687 | |
| Tdicoccoides_TRIDC7BG041420.19 TRIDC7BG041420.19 |
High | No | 3130 | OG0000607 | Get ORF Coding potential... Type: noncoding Potential: -0.967 Folding energies... MFEI: -34.537 AMFE: -0.666 GC content %: 51.885 | |
| Tdicoccoides_TRIDC7BG041420.2 TRIDC7BG041420.2 |
High | No | 4096 | OG0000607 | Get ORF Coding potential... Type: noncoding Potential: -0.995 Folding energies... MFEI: -33.301 AMFE: -0.684 GC content %: 48.706 | |
| Tdicoccoides_TRIDC7BG041420.3 TRIDC7BG041420.3 |
High | No | 3103 | OG0000607 | Get ORF Coding potential... Type: noncoding Potential: -1.292 Folding energies... MFEI: -27.596 AMFE: -0.640 GC content %: 43.120 | |
| Tdicoccoides_TRIDC7BG041420.4 TRIDC7BG041420.4 |
High | No | 3909 | OG0000607 | Get ORF Coding potential... Type: noncoding Potential: -0.991 Folding energies... MFEI: -33.528 AMFE: -0.678 GC content %: 49.476 | |
| Tdicoccoides_TRIDC7BG041420.5 TRIDC7BG041420.5 |
Low | No | 3773 | OG0000607 | Get ORF Coding potential... Type: noncoding Potential: -0.987 Folding energies... MFEI: -33.782 AMFE: -0.679 GC content %: 49.748 | |
| Tdicoccoides_TRIDC7BG041420.6 TRIDC7BG041420.6 |
High | No | 3499 | OG0000607 | Get ORF Coding potential... Type: noncoding Potential: -0.979 Folding energies... MFEI: -34.604 AMFE: -0.680 GC content %: 50.872 | |
| Tdicoccoides_TRIDC7BG041420.7 TRIDC7BG041420.7 |
High | No | 2924 | OG0000607 | Get ORF Coding potential... Type: noncoding Potential: -0.907 Folding energies... MFEI: -31.977 AMFE: -0.663 GC content %: 48.256 | |
| Tdicoccoides_TRIDC7BG041420.8 TRIDC7BG041420.8 |
High | No | 2009 | OG0000607 | Get ORF Coding potential... Type: noncoding Potential: -0.762 Folding energies... MFEI: -30.821 AMFE: -0.686 GC content %: 44.898 | |
| Tdicoccoides_TRIDC7BG041420.9 TRIDC7BG041420.9 |
High | No | 4149 | OG0000607 | Get ORF Coding potential... Type: noncoding Potential: -0.886 Folding energies... MFEI: -32.138 AMFE: -0.677 GC content %: 47.481 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC7BG041420.5 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
