Tdicoccoides TRIDC7BG042170
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC7BG042170 [ TRIDC7BG042170] |
7B | 481183161 | 481190346 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC7BG042170.1 TRIDC7BG042170.1 |
Low | No | 3777 | OG0002292 | Get ORF Coding potential... Type: noncoding Potential: -0.977 Folding energies... MFEI: -27.961 AMFE: -0.676 GC content %: 41.356 | |
| Tdicoccoides_TRIDC7BG042170.10 TRIDC7BG042170.10 |
High | No | 1630 | OG0002292 | Get ORF Coding potential... Type: noncoding Potential: -1.121 Folding energies... MFEI: -31.791 AMFE: -0.704 GC content %: 45.153 | |
| Tdicoccoides_TRIDC7BG042170.2 TRIDC7BG042170.2 |
Low | No | 3921 | OG0002292 | Get ORF Coding potential... Type: noncoding Potential: -0.979 Folding energies... MFEI: -27.809 AMFE: -0.674 GC content %: 41.239 | |
| Tdicoccoides_TRIDC7BG042170.3 TRIDC7BG042170.3 |
Low | No | 3656 | OG0002292 | Get ORF Coding potential... Type: noncoding Potential: -0.975 Folding energies... MFEI: -27.845 AMFE: -0.673 GC content %: 41.357 | |
| Tdicoccoides_TRIDC7BG042170.4 TRIDC7BG042170.4 |
Low | No | 4019 | OG0002292 | Get ORF Coding potential... Type: noncoding Potential: -0.980 Folding energies... MFEI: -27.708 AMFE: -0.679 GC content %: 40.831 | |
| Tdicoccoides_TRIDC7BG042170.5 TRIDC7BG042170.5 |
Low | No | 3740 | OG0002292 | Get ORF Coding potential... Type: noncoding Potential: -0.977 Folding energies... MFEI: -28.115 AMFE: -0.677 GC content %: 41.551 | |
| Tdicoccoides_TRIDC7BG042170.6 TRIDC7BG042170.6 |
Low | No | 3364 | OG0002292 | Get ORF Coding potential... Type: noncoding Potential: -1.205 Folding energies... MFEI: -27.393 AMFE: -0.674 GC content %: 40.636 | |
| Tdicoccoides_TRIDC7BG042170.7 TRIDC7BG042170.7 |
High | No | 1101 | OG0002292 | Get ORF Coding potential... Type: noncoding Potential: -0.892 Folding energies... MFEI: -27.711 AMFE: -0.658 GC content %: 42.144 | |
| Tdicoccoides_TRIDC7BG042170.8 TRIDC7BG042170.8 |
High | No | 1870 | OG0002292 | Get ORF Coding potential... Type: noncoding Potential: -0.922 Folding energies... MFEI: -32.193 AMFE: -0.681 GC content %: 47.273 | |
| Tdicoccoides_TRIDC7BG042170.9 TRIDC7BG042170.9 |
High | No | 1228 | OG0002292 | Get ORF Coding potential... Type: noncoding Potential: -0.843 Folding energies... MFEI: -31.352 AMFE: -0.677 GC content %: 46.336 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC7BG042170.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm; DNA/TcMar-Stowaway | |
| Tdicoccoides_TRIDC7BG042170.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm; DNA/TcMar-Stowaway | |
| Tdicoccoides_TRIDC7BG042170.5 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm; DNA/TcMar-Stowaway | |
| Tdicoccoides_TRIDC7BG042170.6 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm; DNA/TcMar-Stowaway | |
| Tdicoccoides_TRIDC7BG042170.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm; DNA/TcMar-Stowaway | |
| Tdicoccoides_TRIDC7BG042170.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm; DNA/TcMar-Stowaway |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
