Tdicoccoides TRIDC7BG042560
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC7BG042560 [ TRIDC7BG042560] |
7B | 483973612 | 483978671 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC7BG042560.1 TRIDC7BG042560.1 |
High | No | 3297 | OG0001268 | Get ORF Coding potential... Type: noncoding Potential: -1.268 Folding energies... MFEI: -31.080 AMFE: -0.708 GC content %: 43.888 | |
| Tdicoccoides_TRIDC7BG042560.10 TRIDC7BG042560.10 |
High | No | 3599 | OG0001268 | Get ORF Coding potential... Type: noncoding Potential: -1.215 Folding energies... MFEI: -30.031 AMFE: -0.691 GC content %: 43.429 | |
| Tdicoccoides_TRIDC7BG042560.11 TRIDC7BG042560.11 |
High | No | 2727 | OG0001268 | Get ORF Coding potential... Type: noncoding Potential: -1.241 Folding energies... MFEI: -31.060 AMFE: -0.697 GC content %: 44.591 | |
| Tdicoccoides_TRIDC7BG042560.12 TRIDC7BG042560.12 |
High | No | 2525 | OG0001268 | Get ORF Coding potential... Type: noncoding Potential: -1.197 Folding energies... MFEI: -31.552 AMFE: -0.703 GC content %: 44.871 | |
| Tdicoccoides_TRIDC7BG042560.13 TRIDC7BG042560.13 |
High | No | 1165 | OG0001268 | Get ORF Coding potential... Type: noncoding Potential: -0.952 Folding energies... MFEI: -38.197 AMFE: -0.678 GC content %: 56.309 | |
| Tdicoccoides_TRIDC7BG042560.2 TRIDC7BG042560.2 |
High | No | 3773 | OG0001268 | Get ORF Coding potential... Type: noncoding Potential: -1.285 Folding energies... MFEI: -30.276 AMFE: -0.702 GC content %: 43.122 | |
| Tdicoccoides_TRIDC7BG042560.3 TRIDC7BG042560.3 |
High | No | 3114 | OG0001268 | Get ORF Coding potential... Type: noncoding Potential: -1.260 Folding energies... MFEI: -30.979 AMFE: -0.710 GC content %: 43.642 | |
| Tdicoccoides_TRIDC7BG042560.4 TRIDC7BG042560.4 |
High | No | 3161 | OG0001268 | Get ORF Coding potential... Type: noncoding Potential: -1.262 Folding energies... MFEI: -30.879 AMFE: -0.704 GC content %: 43.879 | |
| Tdicoccoides_TRIDC7BG042560.5 TRIDC7BG042560.5 |
High | No | 2668 | OG0001268 | Get ORF Coding potential... Type: noncoding Potential: -1.238 Folding energies... MFEI: -32.091 AMFE: -0.717 GC content %: 44.753 | |
| Tdicoccoides_TRIDC7BG042560.6 TRIDC7BG042560.6 |
High | No | 3113 | OG0001268 | Get ORF Coding potential... Type: noncoding Potential: -1.260 Folding energies... MFEI: -30.967 AMFE: -0.708 GC content %: 43.720 | |
| Tdicoccoides_TRIDC7BG042560.7 TRIDC7BG042560.7 |
High | No | 3225 | OG0001268 | Get ORF Coding potential... Type: noncoding Potential: -1.210 Folding energies... MFEI: -30.881 AMFE: -0.703 GC content %: 43.907 | |
| Tdicoccoides_TRIDC7BG042560.8 TRIDC7BG042560.8 |
High | No | 1352 | OG0001268 | Get ORF Coding potential... Type: noncoding Potential: -1.101 Folding energies... MFEI: -37.448 AMFE: -0.695 GC content %: 53.846 | |
| Tdicoccoides_TRIDC7BG042560.9 TRIDC7BG042560.9 |
High | No | 2607 | OG0001268 | Get ORF Coding potential... Type: noncoding Potential: -1.234 Folding energies... MFEI: -32.620 AMFE: -0.715 GC content %: 45.608 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
