Tdicoccoides TRIDC7BG054650
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC7BG054650 [ TRIDC7BG054650] |
7B | 605081713 | 605084677 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC7BG054650.1 TRIDC7BG054650.1 |
Low | No | 2363 | OG0001514 | Get ORF Coding potential... Type: noncoding Potential: -1.038 Folding energies... MFEI: -28.980 AMFE: -0.641 GC content %: 45.239 | |
| Tdicoccoides_TRIDC7BG054650.10 TRIDC7BG054650.10 |
Low | No | 1203 | OG0001514 | Get ORF Coding potential... Type: noncoding Potential: -1.240 Folding energies... MFEI: -28.861 AMFE: -0.620 GC content %: 46.550 | |
| Tdicoccoides_TRIDC7BG054650.11 TRIDC7BG054650.11 |
Low | No | 1239 | OG0001514 | Get ORF Coding potential... Type: noncoding Potential: -1.227 Folding energies... MFEI: -26.772 AMFE: -0.610 GC content %: 43.906 | |
| Tdicoccoides_TRIDC7BG054650.12 TRIDC7BG054650.12 |
Low | No | 1666 | OG0001514 | Get ORF Coding potential... Type: noncoding Potential: -1.263 Folding energies... MFEI: -26.981 AMFE: -0.633 GC content %: 42.617 | |
| Tdicoccoides_TRIDC7BG054650.2 TRIDC7BG054650.2 |
Low | No | 2454 | OG0001514 | Get ORF Coding potential... Type: noncoding Potential: -1.041 Folding energies... MFEI: -29.059 AMFE: -0.651 GC content %: 44.662 | |
| Tdicoccoides_TRIDC7BG054650.3 TRIDC7BG054650.3 |
Low | No | 2529 | OG0001514 | Get ORF Coding potential... Type: noncoding Potential: -1.275 Folding energies... MFEI: -27.900 AMFE: -0.647 GC content %: 43.140 | |
| Tdicoccoides_TRIDC7BG054650.4 TRIDC7BG054650.4 |
Low | No | 2402 | OG0001514 | Get ORF Coding potential... Type: noncoding Potential: -1.273 Folding energies... MFEI: -28.339 AMFE: -0.645 GC content %: 43.922 | |
| Tdicoccoides_TRIDC7BG054650.5 TRIDC7BG054650.5 |
Low | No | 1669 | OG0001514 | Get ORF Coding potential... Type: noncoding Potential: -1.251 Folding energies... MFEI: -29.652 AMFE: -0.630 GC content %: 47.094 | |
| Tdicoccoides_TRIDC7BG054650.6 TRIDC7BG054650.6 |
Low | No | 1787 | OG0001514 | Get ORF Coding potential... Type: noncoding Potential: -1.256 Folding energies... MFEI: -29.793 AMFE: -0.644 GC content %: 46.279 | |
| Tdicoccoides_TRIDC7BG054650.7 TRIDC7BG054650.7 |
Low | No | 2370 | OG0001514 | Get ORF Coding potential... Type: noncoding Potential: -1.272 Folding energies... MFEI: -28.464 AMFE: -0.639 GC content %: 44.557 | |
| Tdicoccoides_TRIDC7BG054650.8 TRIDC7BG054650.8 |
Low | No | 1404 | OG0001514 | Get ORF Coding potential... Type: noncoding Potential: -1.252 Folding energies... MFEI: -28.789 AMFE: -0.621 GC content %: 46.368 | |
| Tdicoccoides_TRIDC7BG054650.9 TRIDC7BG054650.9 |
Low | No | 2059 | OG0001514 | Get ORF Coding potential... Type: noncoding Potential: -1.265 Folding energies... MFEI: -27.251 AMFE: -0.640 GC content %: 42.593 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC7BG054650.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Tdicoccoides_TRIDC7BG054650.9 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Tdicoccoides_TRIDC7BG054650.5 | SwissProt | 2021-04-01 | Q9ZVC9 | 1.36e-6 |
| Tdicoccoides_TRIDC7BG054650.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Tdicoccoides_TRIDC7BG054650.11 | SwissProt | 2021-04-01 | Q9ZVC9 | 7.85e-7 |
| Tdicoccoides_TRIDC7BG054650.10 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Tdicoccoides_TRIDC7BG054650.6 | SwissProt | 2021-04-01 | Q9LKR4 | 4.89e-7 |
| Tdicoccoides_TRIDC7BG054650.5 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Tdicoccoides_TRIDC7BG054650.12 | SwissProt | 2021-04-01 | Q9ZVC9 | 8.95e-7 |
| Tdicoccoides_TRIDC7BG054650.11 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
