Tdicoccoides TRIDC7BG054980
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC7BG054980 [ TRIDC7BG054980] |
7B | 608330989 | 608337764 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC7BG054980.11 TRIDC7BG054980.11 |
Low | No | 307 | OG0367772 | Get ORF Coding potential... Type: noncoding Potential: -0.326 Folding energies... MFEI: -41.564 AMFE: -0.625 GC content %: 66.450 | |
| Tdicoccoides_TRIDC7BG054980.12 TRIDC7BG054980.12 |
Low | No | 1355 | OG0000947 | Get ORF Coding potential... Type: noncoding Potential: -1.158 Folding energies... MFEI: -26.723 AMFE: -0.654 GC content %: 40.886 | |
| Tdicoccoides_TRIDC7BG054980.13 TRIDC7BG054980.13 |
Low | No | 1772 | OG0000947 | Get ORF Coding potential... Type: noncoding Potential: -1.162 Folding energies... MFEI: -31.134 AMFE: -0.684 GC content %: 45.542 | |
| Tdicoccoides_TRIDC7BG054980.14 TRIDC7BG054980.14 |
Low | No | 2035 | OG0000947 | Get ORF Coding potential... Type: noncoding Potential: -1.269 Folding energies... MFEI: -30.305 AMFE: -0.678 GC content %: 44.668 | |
| Tdicoccoides_TRIDC7BG054980.15 TRIDC7BG054980.15 |
Low | No | 2826 | OG0000947 | Get ORF Coding potential... Type: noncoding Potential: -1.184 Folding energies... MFEI: -28.004 AMFE: -0.678 GC content %: 41.295 | |
| Tdicoccoides_TRIDC7BG054980.16 TRIDC7BG054980.16 |
Low | No | 1979 | OG0000947 | Get ORF Coding potential... Type: noncoding Potential: -1.267 Folding energies... MFEI: -30.435 AMFE: -0.678 GC content %: 44.871 | |
| Tdicoccoides_TRIDC7BG054980.17 TRIDC7BG054980.17 |
Low | No | 1153 | OG0000947 | Get ORF Coding potential... Type: noncoding Potential: -1.148 Folding energies... MFEI: -26.114 AMFE: -0.648 GC content %: 40.330 | |
| Tdicoccoides_TRIDC7BG054980.18 TRIDC7BG054980.18 |
Low | No | 2121 | OG0000947 | Get ORF Coding potential... Type: noncoding Potential: -1.252 Folding energies... MFEI: -27.963 AMFE: -0.675 GC content %: 41.443 | |
| Tdicoccoides_TRIDC7BG054980.19 TRIDC7BG054980.19 |
High | No | 2170 | OG0000947 | Get ORF Coding potential... Type: noncoding Potential: -1.179 Folding energies... MFEI: -28.267 AMFE: -0.682 GC content %: 41.475 | |
| Tdicoccoides_TRIDC7BG054980.20 TRIDC7BG054980.20 |
High | No | 1646 | OG0000947 | Get ORF Coding potential... Type: noncoding Potential: -1.180 Folding energies... MFEI: -28.779 AMFE: -0.679 GC content %: 42.406 | |
| Tdicoccoides_TRIDC7BG054980.21 TRIDC7BG054980.21 |
High | No | 2078 | OG0000947 | Get ORF Coding potential... Type: noncoding Potential: -1.145 Folding energies... MFEI: -28.292 AMFE: -0.680 GC content %: 41.578 | |
| Tdicoccoides_TRIDC7BG054980.22 TRIDC7BG054980.22 |
High | No | 2279 | OG0000947 | Get ORF Coding potential... Type: noncoding Potential: -1.207 Folding energies... MFEI: -28.442 AMFE: -0.684 GC content %: 41.553 | |
| Tdicoccoides_TRIDC7BG054980.23 TRIDC7BG054980.23 |
Low | No | 1679 | OG0000947 | Get ORF Coding potential... Type: noncoding Potential: -1.206 Folding energies... MFEI: -28.309 AMFE: -0.666 GC content %: 42.525 | |
| Tdicoccoides_TRIDC7BG054980.24 TRIDC7BG054980.24 |
High | No | 1172 | OG0000947 | Get ORF Coding potential... Type: noncoding Potential: -1.222 Folding energies... MFEI: -31.561 AMFE: -0.695 GC content %: 45.392 | |
| Tdicoccoides_TRIDC7BG054980.25 TRIDC7BG054980.25 |
High | No | 625 | OG0000947 | Get ORF Coding potential... Type: noncoding Potential: -1.359 Folding energies... MFEI: -25.504 AMFE: -0.651 GC content %: 39.200 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC7BG054980.17 | SwissProt | 2021-04-01 | Q9LS19 | 3.52e-4 |
| Tdicoccoides_TRIDC7BG054980.12 | SwissProt | 2021-04-01 | Q9LVD9 | 2.17e-9 |
| Tdicoccoides_TRIDC7BG054980.18 | SwissProt | 2021-04-01 | Q8RXL8 | 1.63e-5 |
| Tdicoccoides_TRIDC7BG054980.13 | SwissProt | 2021-04-01 | Q9LVD9 | 8.27e-8 |
| Tdicoccoides_TRIDC7BG054980.23 | SwissProt | 2021-04-01 | Q9SJ20 | 7.31e-4 |
| Tdicoccoides_TRIDC7BG054980.14 | SwissProt | 2021-04-01 | Q9LVD9 | 1.02e-7 |
| Tdicoccoides_TRIDC7BG054980.15 | SwissProt | 2021-04-01 | Q9LVD9 | 1.61e-7 |
| Tdicoccoides_TRIDC7BG054980.16 | SwissProt | 2021-04-01 | Q9LVD9 | 9.81e-8 |
| Tdicoccoides_TRIDC7BG054980.11 | SwissProt | 2021-04-01 | Q9LVD9 | 1.62e-11 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
