GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Tdicoccoides_TRIDC7BG055600 [ TRIDC7BG055600]	7B	614500321	614501064	v1	Triticum dicoccoides (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Tdicoccoides_TRIDC7BG055600.1 TRIDC7BG055600.1	High	No	744	OG0367786		Get ORF Coding potential... Type: noncoding Potential: -0.692 Folding energies... MFEI: -33.468 AMFE: -0.599 GC content %: 55.914
Tdicoccoides_TRIDC7BG055600.2 TRIDC7BG055600.2	High	No	238	OG0367787		Get ORF Coding potential... Type: noncoding Potential: -1.084 Folding energies... MFEI: -46.891 AMFE: -0.664 GC content %: 70.588

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).