Tdicoccoides TRIDC7BG056640
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC7BG056640 [ TRIDC7BG056640] |
7B | 621675152 | 621679753 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC7BG056640.1 TRIDC7BG056640.1 |
High | No | 1093 | OG0001126 | Get ORF Coding potential... Type: noncoding Potential: -0.765 Folding energies... MFEI: -30.455 AMFE: -0.598 GC content %: 50.961 | |
| Tdicoccoides_TRIDC7BG056640.10 TRIDC7BG056640.10 |
Low | No | 2698 | OG0001126 | Get ORF Coding potential... Type: noncoding Potential: -0.401 Folding energies... MFEI: -29.029 AMFE: -0.696 GC content %: 41.735 | |
| Tdicoccoides_TRIDC7BG056640.11 TRIDC7BG056640.11 |
Low | No | 2432 | OG0001126 | Get ORF Coding potential... Type: noncoding Potential: -0.387 Folding energies... MFEI: -29.782 AMFE: -0.696 GC content %: 42.804 | |
| Tdicoccoides_TRIDC7BG056640.12 TRIDC7BG056640.12 |
Low | No | 1436 | OG0001126 | Get ORF Coding potential... Type: noncoding Potential: -0.290 Folding energies... MFEI: -33.503 AMFE: -0.697 GC content %: 48.050 | |
| Tdicoccoides_TRIDC7BG056640.13 TRIDC7BG056640.13 |
Low | No | 1230 | OG0001126 | Get ORF Coding potential... Type: noncoding Potential: -0.253 Folding energies... MFEI: -33.008 AMFE: -0.689 GC content %: 47.886 | |
| Tdicoccoides_TRIDC7BG056640.14 TRIDC7BG056640.14 |
Low | No | 1250 | OG0001126 | Get ORF Coding potential... Type: noncoding Potential: -0.257 Folding energies... MFEI: -33.208 AMFE: -0.693 GC content %: 47.920 | |
| Tdicoccoides_TRIDC7BG056640.2 TRIDC7BG056640.2 |
Low | No | 1893 | OG0001126 | Get ORF Coding potential... Type: noncoding Potential: -0.345 Folding energies... MFEI: -36.001 AMFE: -0.696 GC content %: 51.717 | |
| Tdicoccoides_TRIDC7BG056640.3 TRIDC7BG056640.3 |
Low | No | 2199 | OG0001126 | Get ORF Coding potential... Type: noncoding Potential: -0.371 Folding energies... MFEI: -33.288 AMFE: -0.683 GC content %: 48.749 | |
| Tdicoccoides_TRIDC7BG056640.4 TRIDC7BG056640.4 |
Low | No | 3253 | OG0001126 | Get ORF Coding potential... Type: noncoding Potential: -0.425 Folding energies... MFEI: -30.581 AMFE: -0.689 GC content %: 44.359 | |
| Tdicoccoides_TRIDC7BG056640.5 TRIDC7BG056640.5 |
Low | No | 1973 | OG0001126 | Get ORF Coding potential... Type: noncoding Potential: -0.353 Folding energies... MFEI: -33.203 AMFE: -0.693 GC content %: 47.897 | |
| Tdicoccoides_TRIDC7BG056640.6 TRIDC7BG056640.6 |
Low | No | 2741 | OG0001126 | Get ORF Coding potential... Type: noncoding Potential: -0.404 Folding energies... MFEI: -31.711 AMFE: -0.699 GC content %: 45.348 | |
| Tdicoccoides_TRIDC7BG056640.7 TRIDC7BG056640.7 |
Low | No | 2828 | OG0001126 | Get ORF Coding potential... Type: noncoding Potential: -0.408 Folding energies... MFEI: -31.478 AMFE: -0.701 GC content %: 44.908 | |
| Tdicoccoides_TRIDC7BG056640.8 TRIDC7BG056640.8 |
Low | No | 1275 | OG0001126 | Get ORF Coding potential... Type: noncoding Potential: -0.262 Folding energies... MFEI: -33.576 AMFE: -0.676 GC content %: 49.647 | |
| Tdicoccoides_TRIDC7BG056640.9 TRIDC7BG056640.9 |
Low | No | 1644 | OG0001126 | Get ORF Coding potential... Type: noncoding Potential: -0.318 Folding energies... MFEI: -29.836 AMFE: -0.658 GC content %: 45.377 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC7BG056640.11 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tag1; LTR/Gypsy | |
| Tdicoccoides_TRIDC7BG056640.9 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tag1; LTR/Gypsy | |
| Tdicoccoides_TRIDC7BG056640.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tag1; LTR/Gypsy | |
| Tdicoccoides_TRIDC7BG056640.12 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tag1; LTR/Gypsy | |
| Tdicoccoides_TRIDC7BG056640.5 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tag1; LTR/Gypsy | |
| Tdicoccoides_TRIDC7BG056640.13 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tag1; LTR/Gypsy | |
| Tdicoccoides_TRIDC7BG056640.6 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tag1; LTR/Gypsy | |
| Tdicoccoides_TRIDC7BG056640.14 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tag1; LTR/Gypsy | |
| Tdicoccoides_TRIDC7BG056640.7 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tag1; LTR/Gypsy | |
| Tdicoccoides_TRIDC7BG056640.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tag1; LTR/Gypsy |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
