GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Tdicoccoides_TRIDC7BG062300 [ TRIDC7BG062300]	7B	668245109	668250792	v1	Triticum dicoccoides (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Tdicoccoides_TRIDC7BG062300.12 TRIDC7BG062300.12	Low	No	978	OG0367874		Get ORF Coding potential... Type: noncoding Potential: -0.693 Folding energies... MFEI: -32.342 AMFE: -0.666 GC content %: 48.569
Tdicoccoides_TRIDC7BG062300.22 TRIDC7BG062300.22	High	No	303	OG0367875		Get ORF Coding potential... Type: noncoding Potential: -0.929 Folding energies... MFEI: -30.396 AMFE: -0.692 GC content %: 43.894

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Tdicoccoides_TRIDC7BG062300.12	SwissProt	2021-04-01	Q6Z3U3	5.03e-4

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).