GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Tdicoccoides_TRIDC7BG065300 [ TRIDC7BG065300]	7B	688302686	688304868	v1	Triticum dicoccoides (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Tdicoccoides_TRIDC7BG065300.1 TRIDC7BG065300.1	High	No	708	OG0023401		Get ORF Coding potential... Type: noncoding Potential: -1.351 Folding energies... MFEI: -34.379 AMFE: -0.624 GC content %: 55.085
Tdicoccoides_TRIDC7BG065300.2 TRIDC7BG065300.2	High	No	908	OG0023401		Get ORF Coding potential... Type: noncoding Potential: -1.102 Folding energies... MFEI: -39.394 AMFE: -0.676 GC content %: 58.260
Tdicoccoides_TRIDC7BG065300.3 TRIDC7BG065300.3	Low	No	841	OG0023401		Get ORF Coding potential... Type: noncoding Potential: -0.860 Folding energies... MFEI: -32.949 AMFE: -0.684 GC content %: 48.157

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Tdicoccoides_TRIDC7BG065300.3	RepBase (RepeatMasker)	2014-01-31	LINE/L1

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).