Tdicoccoides TRIDC7BG073900
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC7BG073900 [ TRIDC7BG073900] |
7B | 740994353 | 741264224 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC7BG073900.2 TRIDC7BG073900.2 |
High | No | 1100 | OG0004569 | Get ORF Coding potential... Type: noncoding Potential: -0.890 Folding energies... MFEI: -33.311 AMFE: -0.612 GC content %: 54.455 | |
| Tdicoccoides_TRIDC7BG073900.3 TRIDC7BG073900.3 |
High | No | 1207 | OG0004569 | Get ORF Coding potential... Type: noncoding Potential: -0.963 Folding energies... MFEI: -32.305 AMFE: -0.613 GC content %: 52.693 | |
| Tdicoccoides_TRIDC7BG073900.5 TRIDC7BG073900.5 |
High | No | 1206 | OG0004569 | Get ORF Coding potential... Type: noncoding Potential: -0.963 Folding energies... MFEI: -31.420 AMFE: -0.597 GC content %: 52.653 | |
| Tdicoccoides_TRIDC7BG073900.6 TRIDC7BG073900.6 |
High | No | 1148 | OG0004569 | Get ORF Coding potential... Type: noncoding Potential: -0.956 Folding energies... MFEI: -32.502 AMFE: -0.608 GC content %: 53.484 | |
| Tdicoccoides_TRIDC7BG073900.7 TRIDC7BG073900.7 |
High | No | 1080 | OG0004569 | Get ORF Coding potential... Type: noncoding Potential: -0.912 Folding energies... MFEI: -32.622 AMFE: -0.600 GC content %: 54.352 | |
| Tdicoccoides_TRIDC7BG073900.8 TRIDC7BG073900.8 |
High | No | 1101 | OG0004569 | Get ORF Coding potential... Type: noncoding Potential: -0.891 Folding energies... MFEI: -33.072 AMFE: -0.608 GC content %: 54.405 | |
| Tdicoccoides_TRIDC7BG073900.9 TRIDC7BG073900.9 |
High | No | 949 | OG0004569 | Get ORF Coding potential... Type: noncoding Potential: -0.873 Folding energies... MFEI: -32.497 AMFE: -0.607 GC content %: 53.530 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
