Tpratense Tp57577 TGAC v2 gene1384

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Tpratense_Tp57577_TGAC_v2_gene1384
[ Tp57577_TGAC_v2_gene1384]
Tp57577_TGAC_v2_LG7 7010098 7010508 v2 Trifolium pratense (Phytozome 13)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Tpratense_Tp57577_TGAC_v2_mRNA1402
Tp57577_TGAC_v2_mRNA1402
High No 411 OG0346785
Coding potential...
Type: noncoding Potential: -1.211
Folding energies...
MFEI: -11.204 AMFE: -0.288
GC content
%: 38.929


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Tpratense_Tp57577_TGAC_v2_gene1384.png