GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Tpratense_Tp57577_TGAC_v2_gene30362 [ Tp57577_TGAC_v2_gene30362]	Tp57577_TGAC_v2_LG6	15328999	15330537	v2	Trifolium pratense (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Tpratense_Tp57577_TGAC_v2_mRNA31389 Tp57577_TGAC_v2_mRNA31389	High	No	457	OG0059812		Get ORF Coding potential... Type: noncoding Potential: -0.925 Folding energies... MFEI: -27.768 AMFE: -0.588 GC content %: 47.265
Tpratense_Tp57577_TGAC_v2_mRNA31390 Tp57577_TGAC_v2_mRNA31390	High	No	431	OG0059812		Get ORF Coding potential... Type: noncoding Potential: -0.504 Folding energies... MFEI: -27.332 AMFE: -0.580 GC content %: 47.100

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).