Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Tpratense_Tp57577_TGAC_v2_gene34528 [ Tp57577_TGAC_v2_gene34528] |
Tp57577_TGAC_v2_LG5 | 5951731 | 5953453 | v2 | Trifolium pratense (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Tpratense_Tp57577_TGAC_v2_mRNA35701 Tp57577_TGAC_v2_mRNA35701 |
Low | No | 953 | OG0349478 | Get ORF Coding potential... Type: noncoding Potential: -0.827 Folding energies... MFEI: -21.207 AMFE: -0.612 GC content %: 34.627 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Tpratense_Tp57577_TGAC_v2_mRNA35701 | SwissProt | 2021-04-01 | Q7XI45 | 1.14e-10 |
Tpratense_Tp57577_TGAC_v2_mRNA35701 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm |