Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Tpratense_Tp57577_TGAC_v2_gene36410 [ Tp57577_TGAC_v2_gene36410] |
Tp57577_TGAC_v2_scaf_17787 | 333 | 590 | v2 | Trifolium pratense (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Tpratense_Tp57577_TGAC_v2_mRNA37633 Tp57577_TGAC_v2_mRNA37633 |
Low | No | 258 | OG0059827 | Get ORF Coding potential... Type: noncoding Potential: -0.896 Folding energies... MFEI: -18.837 AMFE: -0.408 GC content %: 46.124 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Tpratense_Tp57577_TGAC_v2_mRNA37633 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy |