Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Tpratense_Tp57577_TGAC_v2_gene39285 [ Tp57577_TGAC_v2_gene39285] |
Tp57577_TGAC_v2_scaf_28496 | 3 | 319 | v2 | Trifolium pratense (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Tpratense_Tp57577_TGAC_v2_mRNA40625 Tp57577_TGAC_v2_mRNA40625 |
Low | No | 246 | OG0350140 | Get ORF Coding potential... Type: noncoding Potential: -0.071 Folding energies... MFEI: -25.122 AMFE: -0.557 GC content %: 45.122 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Tpratense_Tp57577_TGAC_v2_mRNA40625 | SwissProt | 2021-04-01 | Q94HW2 | 1.01e-12 |
Tpratense_Tp57577_TGAC_v2_mRNA40625 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia |