GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Vunguiculata_Vigun01g002300 [ Vigun01g002300]	Vu01	303386	305169	v1.1	Vigna unguiculata (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Vunguiculata_Vigun01g002300.1 Vigun01g002300.1	High	No	1206	OG0063800		Get ORF Coding potential... Type: noncoding Potential: -0.775 Folding energies... MFEI: -18.541 AMFE: -0.611 GC content %: 30.348
Vunguiculata_Vigun01g002300.2 Vigun01g002300.2	High	No	1361	OG0063800		Get ORF Coding potential... Type: noncoding Potential: -0.900 Folding energies... MFEI: -18.780 AMFE: -0.616 GC content %: 30.492

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).