GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Vunguiculata_Vigun01g057000 [ Vigun01g057000]	Vu01	11401068	11405546	v1.1	Vigna unguiculata (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Vunguiculata_Vigun01g057000.2 Vigun01g057000.2	High	No	739	OG0063805		Get ORF Coding potential... Type: noncoding Potential: -1.071 Folding energies... MFEI: -25.277 AMFE: -0.570 GC content %: 44.384
Vunguiculata_Vigun01g057000.3 Vigun01g057000.3	High	No	596	OG0063805		Get ORF Coding potential... Type: noncoding Potential: -0.873 Folding energies... MFEI: -23.406 AMFE: -0.521 GC content %: 44.966

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).