GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Vunguiculata_Vigun01g061300 [ Vigun01g061300]	Vu01	12898771	12902368	v1.1	Vigna unguiculata (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Vunguiculata_Vigun01g061300.1 Vigun01g061300.1	High	No	727	OG0379620		Get ORF Coding potential... Type: noncoding Potential: -0.252 Folding energies... MFEI: -25.640 AMFE: -0.609 GC content %: 42.091
Vunguiculata_Vigun01g061300.2 Vigun01g061300.2	High	No	739	OG0379621		Get ORF Coding potential... Type: noncoding Potential: -0.301 Folding energies... MFEI: -25.249 AMFE: -0.606 GC content %: 41.678

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).