GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Vunguiculata_Vigun03g299900 [ Vigun03g299900]	Vu03	48803771	48806540	v1.1	Vigna unguiculata (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Vunguiculata_Vigun03g299900.1 Vigun03g299900.1	High	No	605	OG0015549		Get ORF Coding potential... Type: noncoding Potential: -1.139 Folding energies... MFEI: -20.066 AMFE: -0.559 GC content %: 35.868
Vunguiculata_Vigun03g299900.2 Vigun03g299900.2	High	No	589	OG0015549		Get ORF Coding potential... Type: noncoding Potential: -1.135 Folding energies... MFEI: -19.745 AMFE: -0.551 GC content %: 35.823
Vunguiculata_Vigun03g299900.3 Vigun03g299900.3	High	No	495	OG0015549		Get ORF Coding potential... Type: noncoding Potential: -1.106 Folding energies... MFEI: -20.788 AMFE: -0.565 GC content %: 36.768
Vunguiculata_Vigun03g299900.4 Vigun03g299900.4	High	No	512	OG0015549		Get ORF Coding potential... Type: noncoding Potential: -1.112 Folding energies... MFEI: -21.680 AMFE: -0.587 GC content %: 36.914

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).