GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Vunguiculata_Vigun06g171800 [ Vigun06g171800]	Vu06	29302974	29305672	v1.1	Vigna unguiculata (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Vunguiculata_Vigun06g171800.1 Vigun06g171800.1	High	No	2142	OG0063874		Get ORF Coding potential... Type: noncoding Potential: -0.880 Folding energies... MFEI: -23.651 AMFE: -0.651 GC content %: 36.321
Vunguiculata_Vigun06g171800.2 Vigun06g171800.2	High	No	2149	OG0063874		Get ORF Coding potential... Type: noncoding Potential: -1.080 Folding energies... MFEI: -23.690 AMFE: -0.652 GC content %: 36.342

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).