Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Vunguiculata_Vigun08g078700 [ Vigun08g078700] |
Vu08 | 15500833 | 15502862 | v1.1 | Vigna unguiculata (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Vunguiculata_Vigun08g078700.1 Vigun08g078700.1 |
Low | No | 1256 | OG0009561 | Get ORF Coding potential... Type: noncoding Potential: -0.203 Folding energies... MFEI: -20.788 AMFE: -0.610 GC content %: 34.076 | |
Vunguiculata_Vigun08g078700.2 Vigun08g078700.2 |
Low | No | 1164 | OG0009561 | Get ORF Coding potential... Type: noncoding Potential: -0.184 Folding energies... MFEI: -21.065 AMFE: -0.622 GC content %: 33.849 | |
Vunguiculata_Vigun08g078700.3 Vigun08g078700.3 |
Low | No | 1183 | OG0009561 | Get ORF Coding potential... Type: noncoding Potential: -0.183 Folding energies... MFEI: -20.744 AMFE: -0.607 GC content %: 34.150 | |
Vunguiculata_Vigun08g078700.4 Vigun08g078700.4 |
Low | No | 1237 | OG0009561 | Get ORF Coding potential... Type: noncoding Potential: -0.207 Folding energies... MFEI: -21.091 AMFE: -0.624 GC content %: 33.791 | |
Vunguiculata_Vigun08g078700.5 Vigun08g078700.5 |
Low | No | 864 | OG0009561 | Get ORF Coding potential... Type: noncoding Potential: -0.063 Folding energies... MFEI: -21.053 AMFE: -0.600 GC content %: 35.069 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Vunguiculata_Vigun08g078700.5 | SwissProt | 2021-04-01 | Q9FPT1 | 5.46e-15 |
Vunguiculata_Vigun08g078700.1 | SwissProt | 2021-04-01 | Q9FPT1 | 3.75e-13 |
Vunguiculata_Vigun08g078700.2 | SwissProt | 2021-04-01 | Q9FPT1 | 2.91e-13 |
Vunguiculata_Vigun08g078700.3 | SwissProt | 2021-04-01 | Q9FPT1 | 3.03e-13 |
Vunguiculata_Vigun08g078700.4 | SwissProt | 2021-04-01 | Q9FPT1 | 3.66e-13 |